DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shawl and kvs-4

DIOPT Version :9

Sequence 1:NP_001097131.2 Gene:Shawl / 5740840 FlyBaseID:FBgn0085395 Length:937 Species:Drosophila melanogaster
Sequence 2:NP_001367099.1 Gene:kvs-4 / 190011 WormBaseID:WBGene00012967 Length:539 Species:Caenorhabditis elegans


Alignment Length:513 Identity:137/513 - (26%)
Similarity:222/513 - (43%) Gaps:143/513 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 ENRIILNVSGIRYETYKATLKKIPATRLSRLTE---ALANYDPVL---NEYFFDRHPGVFTQILN 62
            |..:.|||.|.|:...|.|:::....||..|..   |.:|.|...   :|::|:|.|.:|..:..
 Worm   118 EQFVKLNVGGQRFMLRKDTIRRRGVGRLLDLINKPVADSNADAFFSSTSEFYFERPPSLFHIVYQ 182

  Fly    63 YYRTGKLHYPTDVCGPLFEEELEFWGLDSNQ-VEPCCWSTYSIHRDTQNTLAILDKLDIENEKPT 126
            :|..|.:|.|:::|.....||||:|.:..:| :..||.:               .::|.::|:..
 Worm   183 FYLNGVIHQPSNLCPVDIIEELEYWRIIPDQYLASCCCA---------------QQIDDDDEEVE 232

  Fly   127 EEQIARLFGFEEALSNGELNCWQRIKPKIWAMFDEPSSSTGAKIVAGMSVFFIFVSVISFCLKTH 191
            |:....||   :.|..||      |:..:|.:.:||:||..|:..|..||.|:.:|:....|.:.
 Worm   233 EQDKPNLF---KTLRFGE------IRRCVWNIIEEPASSGKAQAFAVCSVVFVLISISGLVLGSL 288

  Fly   192 PGFRVDLPSGAHDAHGPGAGGPPHGHDPMGEPPQTHQYHQHSITPPSGSIGPTFRVTNYTSYSSG 256
            |..:|                                                            
 Worm   289 PELQV------------------------------------------------------------ 293

  Fly   257 NFTASGQATPIATIKGGQRQRLKRNINGSILNEFIEEKILGHNGRRKHGWIETYGQPHEAFFYVE 321
                       ||     :||  .|:.|....|.....|||                     |:|
 Worm   294 -----------AT-----KQR--NNLTGEEFTEMEPMPILG---------------------YIE 319

  Fly   322 LVCNVWFFIEVIIRLIVSPNLWQFIKSPVNIIDFTATLSFYTDVM--------QRMGEYTG---L 375
            .||.|||.:|..::::||....:..:..:||||..|.|.|..:::        :::.:..|   :
 Worm   320 YVCIVWFTMEYGLKMLVSAERSKTFRQLLNIIDLLAILPFIIEMLLLIFGISTEQLRDLKGAFLV 384

  Fly   376 LEAFSIVRIMRLFKLTRHSPGLRILIHTFKASAKELTLLVFFLVLGIVFFASLAYYAEKLQDNPD 440
            :....::|::|:.||.|:|.||::...|.|||.::|.::...::.|::||::|.|:.||  |.|.
 Worm   385 IRILRVLRVIRVLKLGRYSSGLQMFGKTLKASFRQLGMMAMVVMTGVIFFSTLVYFLEK--DEPA 447

  Fly   441 NQFKSIPLGLWWAIVTMTTVGYGDVAPKTYPGMFVGALCALAGVLTIALPVPVIVSNF 498
            ::|.|||...||.|||||||||||:.|.|.||..|.......|||.:|||:.:||.||
 Worm   448 SKFHSIPAACWWCIVTMTTVGYGDLTPVTVPGKLVATGAIACGVLVLALPITIIVDNF 505

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShawlNP_001097131.2 BTB 7..99 CDD:197585 30/98 (31%)
BTB_2 7..97 CDD:280393 29/96 (30%)
Ion_trans 307..506 CDD:278921 72/203 (35%)
Ion_trans_2 <449..499 CDD:285168 28/50 (56%)
kvs-4NP_001367099.1 BTB_POZ_Kv 121..208 CDD:349626 27/86 (31%)
Ion_trans 265..513 CDD:395416 91/342 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D818306at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.920

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