DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shawl and kvs-1

DIOPT Version :9

Sequence 1:NP_001097131.2 Gene:Shawl / 5740840 FlyBaseID:FBgn0085395 Length:937 Species:Drosophila melanogaster
Sequence 2:NP_001360715.1 Gene:kvs-1 / 183753 WormBaseID:WBGene00002242 Length:499 Species:Caenorhabditis elegans


Alignment Length:526 Identity:148/526 - (28%)
Similarity:225/526 - (42%) Gaps:149/526 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 GENRIILNVSGIRYETYKATLKKIPATRLSRLTEALA--NYDPVL----------NEYFFDRHPG 55
            |:..|.|||.|   .:::..:..|.|........|.|  |::..|          .||:.:|...
 Worm    69 GDTVIKLNVGG---TSFRIRISSIFARSADEKLSAFAQLNHEQRLQACDAFLMPQEEYYLERSAV 130

  Fly    56 VFTQILNYYRTGKLHYPTDVCGPLFEEELEFWGLDSNQVEPCCWSTYSIHRDTQNTLAILDKLDI 120
            :|..|..||.:|:||.|.|||...|..||.:|.::...:..|||..|::....:..:|       
 Worm   131 LFDSIFKYYISGQLHRPLDVCPTEFATELAYWKINDGLMSNCCWRGYNMSPSLEELVA------- 188

  Fly   121 ENEKPTEEQIARLFGFEEALSNGELNCWQRIKPKIWAMFDEPSSSTGAKIVAGMSVFFIFVSVIS 185
                |.|::|             ||:. :.::.:| ..|.|...|..:.:....|:.|:.:|||.
 Worm   189 ----PKEKKI-------------ELHD-RSMRSRI-HQFCEGDGSLFSTLFTFGSITFVLISVIG 234

  Fly   186 FCLKTHPGFRVDLPSGAHDAHGPGAGGPPHGHDPMGEPPQTHQYHQHSITPPSGSIGPTFRVTNY 250
            ..|                                                  ||| ..|:|..|
 Worm   235 LVL--------------------------------------------------GSI-HEFQVPIY 248

  Fly   251 TSYSSGNFTASGQATPIATIKGGQRQRL-------KRNINGSILNEFIEEKILGHNGRRKHGWIE 308
            .                   |||:.:|:       :...:.|:.||.|.             |  
 Worm   249 K-------------------KGGKSERISNWSIADQNGTDSSVENENII-------------W-- 279

  Fly   309 TYGQPHEAFFYVELVCNVWFFIEVIIRLIVSPNLWQFIKSPVNIIDFTATLSFYTDV-------- 365
               :||..|.|||.||.:||.:|.|:||.|:||.:||:...:||:|..|.:.||.::        
 Worm   280 ---EPHPIFGYVETVCIIWFTVEFIVRLAVTPNRFQFLVGIMNIVDMIAIIPFYLELGLALFGID 341

  Fly   366 MQRMGEYTGLL---EAFSIVRIMRLFKLTRHSPGLRILIHTFKASAKELTLLVFFLVLGIVFFAS 427
            :..:.:..|.|   ....::|::|:.||.|:|.|:|....|.|:||::|.::...|..|:|||::
 Worm   342 VASLSDIKGALLVVRVLRVLRVVRILKLGRYSSGMRTFALTLKSSARQLGMMGMVLSTGVVFFST 406

  Fly   428 LAYYAEKLQDNPDNQFKSIPLGLWWAIVTMTTVGYGDVAPKTYPGMFVGALCALAGVLTIALPVP 492
            |.|:.||  |..|..|.|||...||||||||||||||..|.|.||..:.:...::|||.:|||:.
 Worm   407 LLYFVEK--DEKDTPFTSIPAAFWWAIVTMTTVGYGDYVPVTVPGKLIASGAIISGVLVLALPIT 469

  Fly   493 VIVSNF 498
            :||.||
 Worm   470 IIVDNF 475

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShawlNP_001097131.2 BTB 7..99 CDD:197585 30/103 (29%)
BTB_2 7..97 CDD:280393 29/101 (29%)
Ion_trans 307..506 CDD:278921 83/203 (41%)
Ion_trans_2 <449..499 CDD:285168 28/50 (56%)
kvs-1NP_001360715.1 BTB_POZ_Kv 73..163 CDD:349626 28/92 (30%)
Ion_trans 276..475 CDD:366146 83/218 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D818306at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.920

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