DRSC/TRiP Functional Genomics Resources

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Protein Alignment Shawl and kqt-1

DIOPT Version :9

Sequence 1:NP_001097131.2 Gene:Shawl / 5740840 FlyBaseID:FBgn0085395 Length:937 Species:Drosophila melanogaster
Sequence 2:NP_741819.1 Gene:kqt-1 / 180933 WormBaseID:WBGene00002233 Length:740 Species:Caenorhabditis elegans


Alignment Length:744 Identity:154/744 - (20%)
Similarity:255/744 - (34%) Gaps:207/744 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   246 RVTNYTSYSSGNFTASGQATPIATIKGGQRQRLKRNINGSILNEFIEEKILGHNGRRKHGW-IET 309
            ::|.......||...|....|:........||.:|..|.  ::.|:|         |..|| ..|
 Worm    98 QLTTLHDSEEGNRKMSLVGKPLTYKNYRTDQRFRRMQNK--MHNFLE---------RPRGWKAAT 151

  Fly   310 YGQPHEA---------------------------FFYVELVCNVWFFIEVIIRLIVSPNLW---- 343
            |   |.|                           .:|:|:|..:|...|.|.|      :|    
 Worm   152 Y---HLAVLFMVLMCLALSVFSTMPDFEVNATIVLYYLEIVFVIWLATEYICR------VWSAGC 207

  Fly   344 -----------QFIKSPVNIIDFTATLSFYTDVMQRMGEYTGLLEAFSIVR------IMRLFKLT 391
                       :|..|...:||....|:..|.:.  :|. ||.:.|.|.:|      |:|:.::.
 Worm   208 RSRYRGISGRIRFATSAYCVIDIIVILASITVLC--IGA-TGQVFAASAIRGLRFFQILRMLRID 269

  Fly   392 RHSPGLRILIHTFKASAKELTLLVFFLVLGIVFFASLAYYAEKLQDNPDNQFKSIPLGLWWAIVT 456
            |.:...::|.....|..:||...|:...||::|.:.|.|..||   |.::::::....|||.::|
 Worm   270 RRAGTWKLLGSVVWAHRQELLTTVYIGFLGLIFSSFLVYLCEK---NTNDKYQTFADALWWGVIT 331

  Fly   457 MTTVGYGDVAPKTYPGMFVGALCALAGVLTIALPVPVIVSNFSMFYSHTQARSKLPKKRRRVLPV 521
            ::||||||..|:|:||..:.|.|||.|:...|||..::.|.|::.....|.:..|.::|.....:
 Worm   332 LSTVGYGDKTPETWPGKIIAAFCALLGISFFALPAGILGSGFALKVQQHQRQKHLIRRRVPAAKL 396

  Fly   522 EQPRRKREPTAPH-----RGRTNAIKQTPPTGPGLVAGGVVPVGAGGPGLGGHAVGHSAAGAPMF 581
            .|...:....||.     ..:.:..::.||         :|.:...|..                
 Worm   397 IQCLWRHYSAAPESTSLATWKIHLARELPP---------IVKLTPNGSN---------------- 436

  Fly   582 KDAFGGAKIGTVNVNGVNVIGLHPAQRTTTTMAMAMNEADPTPMSALT---YQVPMLQPTPTPAH 643
                             |..||....|.:|.....:|..:....|..|   ..||.:..|.:...
 Worm   437 -----------------NATGLINRLRQSTKRTPNLNNQNLAVNSQATSKNLSVPRVHDTISLVS 484

  Fly   644 SHGHAHGHAHGLGPASAAMTSSASLTGS--AASAAVATAAAAAPAGPSFISSDYLSVPAVQSLQP 706
            :...:.....|....|....|.:...||  |...:|..:...||      |:.:|........||
 Worm   485 TSDISEIEQLGALGFSLGWKSKSKYGGSKKATDDSVLQSRMLAP------SNAHLDEEEAVGYQP 543

  Fly   707 RAATTGHDF---------------MLPLQPKLLGPLERKDQHPLQLTAHNLASDTHQLMYSGHAH 756
            :   |..:|               :|..:.|....|:..|           ..|..:...:||..
 Worm   544 Q---TIEEFTPALKNCVRAIRRIQLLVARKKFKEALKPYD-----------VKDVIEQYSAGHVD 594

  Fly   757 SQHKVGG---------GAAVLNVPPTLSMSHTQMPPGIASMGQRTPNLSF-------RPA----- 800
            .|.:|..         |..:..:.|.:|| .|::.....::|:....|..       |.|     
 Worm   595 LQSRVKTVQAKLDFICGKNIEKIEPKISM-FTRIATLETTVGKMDKKLDLMVEMLMGRQASQRVF 658

  Fly   801 ------HGASSQVATVQQPIPHSHACHASTNCNIKISVASAGLSVGCPDEFRTPKVTLLDDLSDD 859
                  .|..|:..:.:|.:..|.....||:..:   ..:...|.|...:.| |.:..:|     
 Worm   659 SQNTSPRGEFSEPTSARQDLTRSRRSMVSTDMEM---YTARSHSPGYHGDAR-PIIAQID----- 714

  Fly   860 VNSSTDDCGDCCLVDDSDTYEGTTINNGP 888
               :.||..|..:.|||     |.:||||
 Worm   715 ---ADDDDEDENVFDDS-----TPLNNGP 735

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShawlNP_001097131.2 BTB 7..99 CDD:197585
BTB_2 7..97 CDD:280393
Ion_trans 307..506 CDD:278921 64/246 (26%)
Ion_trans_2 <449..499 CDD:285168 23/49 (47%)
kqt-1NP_741819.1 Ion_trans 173..379 CDD:278921 60/217 (28%)
Ion_trans_2 297..371 CDD:285168 30/76 (39%)
KCNQ_channel <540..651 CDD:281513 20/125 (16%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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