DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shawl and exp-2

DIOPT Version :9

Sequence 1:NP_001097131.2 Gene:Shawl / 5740840 FlyBaseID:FBgn0085395 Length:937 Species:Drosophila melanogaster
Sequence 2:NP_001367760.1 Gene:exp-2 / 179003 WormBaseID:WBGene00001374 Length:510 Species:Caenorhabditis elegans


Alignment Length:516 Identity:132/516 - (25%)
Similarity:209/516 - (40%) Gaps:144/516 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 LNVSG----------IRYETYKATLKKIPATRLSRLTEALANYDPVLNEYFFDRHPGVFTQILNY 63
            ||:.|          :|.:|.....:.:..|..:||..|.| |....:.|:|.|.|..|..:..|
 Worm    81 LNIGGTSFMILIDAILRADTTTFLSRFVQLTHTARLKVADA-YISADDAYYFQRSPTSFEAVFQY 144

  Fly    64 YRTGKLHYPTDVCGPLFEEELEFWGLDSNQVEPCCWSTYSIHRDTQNTLAILDKLDIENEKPTEE 128
            |.||.:|.|:::|...|..||:||.:....|..||                   .||..:|..||
 Worm   145 YATGVVHRPSEICPASFLSELDFWRISHQHVGSCC-------------------ADIIPQKREEE 190

  Fly   129 QIARLFGFEEALSN---GELNCWQRIKPKIWAMFDEPSSSTGAKIVAGMSVFFIFVSVISFCLKT 190
            :      .||.:.:   .:|.| .:::.::|...:.|.||..||.....|..|:.:||:.....|
 Worm   191 K------EEEKVDDTTFDKLMC-GKLRRRMWTFLERPGSSMQAKAFELSSTLFVAISVMGLSFGT 248

  Fly   191 HPGFRVDLPSGAHDAHGPGAGGPPHGHDPMGEPPQTHQY--HQHSITPPSGSIGPTFRVTNYTSY 253
            .|.|:|                             ||..  |..::..|:|:             
 Worm   249 IPDFQV-----------------------------THLMPPHNETVVLPNGT------------- 271

  Fly   254 SSGNFTASGQATPIATIKGGQRQRLKRNINGSILNEFIEEKILGHNGRRKHGWIETYGQPHEAFF 318
                         :..::..::.|::                                  |.||.
 Worm   272 -------------VTVVQKVEQMRVE----------------------------------HPAFV 289

  Fly   319 YVELVCNVWFFIEVIIRLIVSPNLWQFIKSPVNIIDFTATLSFYTDVMQRM-----GEYTGLLEA 378
            :.|.:|..:|.:|..:|...:|...:|...|:|::|..|.:.||.:::..:     .:...|..|
 Worm   290 FTERICIAFFTVEYCLRFFAAPRKLRFALKPLNLVDLLAIVPFYLELLLTLCGVDDRKLRDLRWA 354

  Fly   379 FSIVRIM------RLFKLTRHSPGLRILIHTFKASAKELTLLVFFLVLGIVFFASLAYYAEKLQD 437
            |.:|||:      |:.||.|.|.||:....|.:.|.|:|.::...|:.|:|||:::.|:.||  |
 Worm   355 FLVVRILRVLRVIRIIKLGRFSSGLQTFGMTLQRSQKQLQMMTIVLLTGVVFFSTMIYFLEK--D 417

  Fly   438 NPDNQFKSIPLGLWWAIVTMTTVGYGDVAPKTYPGMFVGALCALAGVLTIALPVPVIVSNF 498
            .....|.|||...||.|||||||||||..|.|..|..:.:...:.|||.:|||:.:||.||
 Worm   418 EEGTPFTSIPAAYWWCIVTMTTVGYGDAVPATTMGKIIASAAIMCGVLVLALPITIIVDNF 478

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShawlNP_001097131.2 BTB 7..99 CDD:197585 30/99 (30%)
BTB_2 7..97 CDD:280393 29/97 (30%)
Ion_trans 307..506 CDD:278921 72/203 (35%)
Ion_trans_2 <449..499 CDD:285168 26/50 (52%)
exp-2NP_001367760.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D818306at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.920

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