DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shawl and shl-1

DIOPT Version :9

Sequence 1:NP_001097131.2 Gene:Shawl / 5740840 FlyBaseID:FBgn0085395 Length:937 Species:Drosophila melanogaster
Sequence 2:NP_500975.2 Gene:shl-1 / 177400 WormBaseID:WBGene00022240 Length:578 Species:Caenorhabditis elegans


Alignment Length:553 Identity:170/553 - (30%)
Similarity:253/553 - (45%) Gaps:149/553 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 ENRIILNVSGIRYETYKATLKKIPATRLSRLTEALANYDPVLNEYFFDRHPGVFTQILNYYRTGK 68
            :.::.:|:||.|:||:|.||:|.|.|.|.. .|....||....||||||.|.:|..||.:|||||
 Worm    45 DEKLAINISGRRFETWKNTLEKFPETLLGS-NEKEFFYDEDTGEYFFDRDPDIFRHILTFYRTGK 108

  Fly    69 LHYPTDVCGPLFEEELEFWGLDSNQVEPCCWSTYSIHRDTQNTLAILDKLDIENEKPTEEQIARL 133
            ||||...|...::|||.|:|:..:.:..||:..|.                 :.::..:|::.  
 Worm   109 LHYPRHECLVAYDEELSFFGIMPDLISDCCYEDYK-----------------DKKRENQERLQ-- 154

  Fly   134 FGFEEALSNGELNCWQ-RIKPKIWAMFDEPSSSTGAKIVAGMSVFFIFVSVISFCLKTHPGFRVD 197
               ||.:.|.:::..: .:|.|:||.|:.|.:::.|.:...:..|||.|||:...::|       
 Worm   155 ---EERVENADISTLKLSLKEKMWAAFENPHTTSIALVFYYVIGFFIAVSVMCNIVET------- 209

  Fly   198 LPSGAHDAHGPGAGGPPHGHDPMGEPPQTHQYHQHSITPPSGSIGPTFRVTNYTSYSSGNFTASG 262
            :|.|..|                                                          
 Worm   210 IPCGYED---------------------------------------------------------- 216

  Fly   263 QATPIATIKGGQRQRLKRNINGSILNEFIEEKILGHNGRRKHGWIETYGQPH-EAFFYVELVCNV 326
                                |.|:                      |.|:.: |.||.::..|.:
 Worm   217 --------------------NVSV----------------------TCGEAYEEQFFVIDTACVI 239

  Fly   327 WFFIEVIIRLIVSPNLWQFIKSPVNIIDFTATLSFYTD-VMQRMGEYTGLLEAFSIVRIMRLFKL 390
            .|.||..:|||.:|:..:|::|.:::||..|.:.:|.. |:....:.:||.....:.|:.|:||.
 Worm   240 IFTIEYFLRLISAPDRIKFMRSIMSVIDVIAIMPYYVSLVLTDNKDVSGLFVTLRVFRVFRIFKF 304

  Fly   391 TRHSPGLRILIHTFKASAKELTLLVFFLVLGIVFFASLAYYAEKLQDNPDNQFKSIPLGLWWAIV 455
            :|||.|||||.:|.|:.|.||..|||.|.:.|:.||::.|||||..|  ..:|.|||...|:.||
 Worm   305 SRHSQGLRILGYTLKSCASELGFLVFSLAMAIIIFATIMYYAEKKVD--ATRFTSIPSAFWYTIV 367

  Fly   456 TMTTVGYGDVAPKTYPGMFVGALCALAGVLTIALPVPVIVSNFSMFYSHTQA--RSKLPKKRR-- 516
            |:||:||||:.|.|..|..||.:|:|:|||.|||||||||||||..|...|.  :.|..||.|  
 Worm   368 TLTTLGYGDMVPSTIMGKIVGGVCSLSGVLVIALPVPVIVSNFSRIYHQNQRADKRKAQKKARLA 432

  Fly   517 RVLPVEQP------RRKREPTAPHRGRTNAIKQ 543
            |:..|:..      .:||    .|..|..|.:|
 Worm   433 RIRIVKNASGLALFNKKR----AHEARMLAFEQ 461

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShawlNP_001097131.2 BTB 7..99 CDD:197585 42/91 (46%)
BTB_2 7..97 CDD:280393 41/89 (46%)
Ion_trans 307..506 CDD:278921 90/200 (45%)
Ion_trans_2 <449..499 CDD:285168 31/49 (63%)
shl-1NP_500975.2 BTB_POZ 6..149 CDD:365784 44/121 (36%)
Ion_trans 187..416 CDD:366146 103/337 (31%)
DUF3399 460..528 CDD:371777 1/2 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.810

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