DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shawl and kvs-5

DIOPT Version :9

Sequence 1:NP_001097131.2 Gene:Shawl / 5740840 FlyBaseID:FBgn0085395 Length:937 Species:Drosophila melanogaster
Sequence 2:NP_001294321.1 Gene:kvs-5 / 176899 WormBaseID:WBGene00021948 Length:600 Species:Caenorhabditis elegans


Alignment Length:516 Identity:138/516 - (26%)
Similarity:225/516 - (43%) Gaps:103/516 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 LNVSGIRYETYKATLKKI-PATRLSRLTEALAN--------YDPVLNEYFFDRHPGVFTQILNYY 64
            ||:.|..|.....::.|. |.|.|.|.......        |....:||||:|.|..|..|.::|
 Worm   141 LNIGGSSYRIRTRSIIKFGPKTLLGRFVRMNHEHRRQWADWYFEEQDEYFFERVPRYFDPIYDFY 205

  Fly    65 RTGKLHYPTDVCGPLFEEELEFWGLDSNQVEPCC--WSTYSIHR--DTQNTLAILDKLDIENEKP 125
            .|||||.|.|:|...|..||.||.:..::::.||  ::.|.:..  |.:.|   .:..:::.||.
 Worm   206 ATGKLHVPKDLCFDKFMAELRFWAVSKSRMDECCSPFTQYCVTMGGDPKCT---DEAAELQKEKD 267

  Fly   126 TEEQIARLFGFEEALSNGELNCWQRIKPKIWAMFDEPSSSTGAKIVAGMSVFFIFVSVISFCLKT 190
                  ...|         :.| ..|:.::|.:.:..|.|...|....:|..|:.:|:.:..|.:
 Worm   268 ------HFIG---------VRC-ANIRRRLWLILEGHSQSKWWKAFEIISTAFVVLSISALILGS 316

  Fly   191 HPGFRVDLPSGAHDAHGPGAGGPPHGHDPMGEPPQTHQYHQHSITPPSGSIGPTFRVTNYTSYSS 255
            .|.|:|                           ||..:         .|.:  .:....|.:|.:
 Worm   317 IPEFQV---------------------------PQKSE---------DGQL--VYATATYPTYPN 343

  Fly   256 GNFTASGQATPIATI--KGGQRQRLKRNINGSILNEFIEEKILGHNGRRKHGWIETYGQPHEAFF 318
            |    .|......|:  :|..      |..|.::   .||.:   ...|..|.||.  ..|..|.
 Worm   344 G----GGMTIESRTVVREGSD------NSTGDLM---AEETV---PTPRNTGKIEM--TEHPVFT 390

  Fly   319 YVELVCNVWFFIEVIIRLIVSPNLWQFIKSPVNIIDFTATLSFYTDVMQRMGEYTG--------- 374
            :||.||.::|.||..:|.||:|....|.:..:|:||..:...||.:::..:...:|         
 Worm   391 WVENVCVIYFSIEYAMRFIVAPRKLAFARQILNVIDLLSIAPFYFELLLWICGISGENVRKVRWA 455

  Fly   375 --LLEAFSIVRIMRLFKLTRHSPGLRILIHTFKASAKELTLLVFFLVLGIVFFASLAYYAEKLQD 437
              .:....::|::|:.||.|.||||.....|.:.|.|::.::...::..|:||::|.|:.|:  |
 Worm   456 FLTVRLLRVLRVIRIAKLGRFSPGLANFALTIRKSKKQMQMVGVVMMTVIIFFSTLIYFLER--D 518

  Fly   438 NPDNQFKSIPLGLWWAIVTMTTVGYGDVAPKTYPGMFVGALCALAGVLTIALPVPVIVSNF 498
            .|..:|.|||...||.:|||.||||||:.|.|..|..||:...:.||:.:|||:.::|:||
 Worm   519 EPGTKFTSIPATFWWCVVTMATVGYGDLVPVTVAGKLVGSGAIVCGVMVLALPITIMVNNF 579

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShawlNP_001097131.2 BTB 7..99 CDD:197585 34/100 (34%)
BTB_2 7..97 CDD:280393 32/96 (33%)
Ion_trans 307..506 CDD:278921 70/203 (34%)
Ion_trans_2 <449..499 CDD:285168 24/50 (48%)
kvs-5NP_001294321.1 BTB_POZ_Kv 139..228 CDD:349626 30/86 (35%)
Ion_trans 377..587 CDD:366146 71/207 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D818306at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.920

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