DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shawl and kcna10

DIOPT Version :9

Sequence 1:NP_001097131.2 Gene:Shawl / 5740840 FlyBaseID:FBgn0085395 Length:937 Species:Drosophila melanogaster
Sequence 2:XP_002938481.1 Gene:kcna10 / 100497698 XenbaseID:XB-GENE-991589 Length:499 Species:Xenopus tropicalis


Alignment Length:535 Identity:168/535 - (31%)
Similarity:249/535 - (46%) Gaps:153/535 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 DGENRIILNVSGIRYETYKATLKKIPATRLSRLTEALANYDPVLNEYFFDRHPGVFTQILNYYRT 66
            :|:.|:.:|::|:|:||:..||.:.|.|.|....:.:..:|.:.|||||||:...|..||.||::
 Frog    71 EGDQRVFINIAGLRFETHLKTLSEFPDTLLGDPKKRIHYFDSMRNEYFFDRNRPSFDGILYYYQS 135

  Fly    67 -GKLHYPTDVCGPLFEEELEFWGLDSNQVEPCCWSTYSIHRDTQNTLAILDKLDIENEKPTEEQI 130
             ||:..|.:|...:|.:|:.|:.|.:..::.        .||.:..|.     |.|...||.:..
 Frog   136 GGKIRRPANVPIDVFADEINFYELGNEAMDQ--------FRDDEGFLK-----DPEIPLPTNDYY 187

  Fly   131 ARLFGFEEALSNGELNCWQRIKPKIWAMFDEPSSSTGAKIVAGMSVFFIFVSVISFCLKTHPGFR 195
                                  .:.|.:|:.|.|||.|:.:|.:||..|.:|::.||::|.|.||
 Frog   188 ----------------------KQFWLLFEYPESSTAARGMALVSVLVIIISILIFCMETLPEFR 230

  Fly   196 VDLPSGAHDAH---GPGAGGPPHGHDPMGEPPQTHQYHQHSITPPSGSIGPTFRVTNYTSYSSGN 257
            .:     .|.:   |.|                   .:..|.|.||                   
 Frog   231 EE-----RDLYFYRGTG-------------------NYSESTTHPS------------------- 252

  Fly   258 FTASGQATPIATIKGGQRQRLKRNINGSILNEFIEEKILGHNGRRKHGWIETYGQPHEAFFYVEL 322
                                                               |:..|   ||.:|.
 Frog   253 ---------------------------------------------------TFTDP---FFMIET 263

  Fly   323 VCNVWFFIEVIIRLIVSPNLWQFIKSPVNIIDFTATLSFYTDVMQRMGEYT----------GLLE 377
            .|..||..|:::|.:|.|:...|.::.:||||..:.:.::..::..:.:.|          .:|.
 Frog   264 TCIAWFSFELVVRFVVCPSTSAFFRNIMNIIDLVSIIPYFVTLVTELFKQTEPVGQQNMSLAILR 328

  Fly   378 AFSIVRIMRLFKLTRHSPGLRILIHTFKASAKELTLLVFFLVLGIVFFASLAYYAEKLQDNPDNQ 442
            ...:||:.|:|||:|||.||:||..|.|||.:||.||:|||.:|::.|:|..|:||  .|.|.:|
 Frog   329 IVRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAE--VDEPQSQ 391

  Fly   443 FKSIPLGLWWAIVTMTTVGYGDVAPKTYPGMFVGALCALAGVLTIALPVPVIVSNFSMFYSHTQA 507
            |.|||.|.|||:||||||||||:.|.|..|..||.|||:|||||||||||||||||:.|| |.:.
 Frog   392 FLSIPDGFWWAVVTMTTVGYGDMCPITLSGKVVGTLCAIAGVLTIALPVPVIVSNFNYFY-HRET 455

  Fly   508 RSKLPKKRRRVLPVE 522
            .:    :.|..||||
 Frog   456 EN----EERHSLPVE 466

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShawlNP_001097131.2 BTB 7..99 CDD:197585 31/92 (34%)
BTB_2 7..97 CDD:280393 31/90 (34%)
Ion_trans 307..506 CDD:278921 98/208 (47%)
Ion_trans_2 <449..499 CDD:285168 38/49 (78%)
kcna10XP_002938481.1 BTB_POZ 74..200 CDD:365784 42/160 (26%)
Ion_trans 246..454 CDD:366146 102/283 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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