DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shawl and kcng2

DIOPT Version :9

Sequence 1:NP_001097131.2 Gene:Shawl / 5740840 FlyBaseID:FBgn0085395 Length:937 Species:Drosophila melanogaster
Sequence 2:XP_017950308.2 Gene:kcng2 / 100497537 XenbaseID:XB-GENE-954003 Length:489 Species:Xenopus tropicalis


Alignment Length:567 Identity:147/567 - (25%)
Similarity:230/567 - (40%) Gaps:179/567 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 DGENRIILNVSGIRYETYKATLKKIPATRLSRLTEALANYDPVL----------NEYFFDRHPGV 56
            |....:|:||.||:|.....||:..|.|||.:| :...|||.::          ||:||||:|..
 Frog    58 DRTRHVIINVGGIKYRIPWTTLENCPLTRLGKL-KTCNNYDEIMDVCDDYDINCNEFFFDRNPCA 121

  Fly    57 FTQILNYYRTGKLHYPTDVCGPLFEEELEFWGLDSNQVEPCCWSTYSIHRDTQNTLAILDKLDIE 121
            |..|:.:...|||....::|...|:|||.:||::..|:|.||                |.||..:
 Frog   122 FRTIMTFLAAGKLRILREMCALSFQEELIYWGIEEEQLEWCC----------------LRKLQQK 170

  Fly   122 NEKPTEEQIARLFGFEEALSN----------GEL-NCWQRIKPKIWAMFDEPSSSTGAKIVAGMS 175
            .|:..|   |:::..|..:||          |.| .|.:.::.    |.:.|.|....||.|.:|
 Frog   171 EEELAE---AKMYEGESGISNENSQSALQDSGRLAQCMKHLRD----MVENPHSGIPGKIFACLS 228

  Fly   176 VFFIFVSVISFCLKTHPGFRVDLPSGAHDAHGPGAGGPPHGHDPMGEPPQTHQYHQHSITPPSGS 240
            |.|:.::.:|.|:.|.|.||                    ..:..||..|               
 Frog   229 VSFVAITAVSLCISTMPDFR--------------------DEEDRGECSQ--------------- 258

  Fly   241 IGPTFRVTNYTSYSSGNFTASGQATPIATIKGGQRQRLKRNINGSILNEFIEEKILGHNGRRKHG 305
                                                                             
 Frog   259 ----------------------------------------------------------------- 258

  Fly   306 WIETYGQPHEAFFYVELVCNVWFFIEVIIRLIVSPNLWQFIKSPVNIIDFTATLSFY-------- 362
              :.|.     .|.:|.||..||.:|.::|.|.:.:...|:::|:|:||..|.|.:|        
 Frog   259 --KCYD-----IFVLETVCVAWFSLEFVLRFIQAESKCVFLRTPLNMIDIMAILPYYITLIVDAL 316

  Fly   363 ---------TDVMQRMGEYTGLLEAFSIVRIMRLFKLTRHSPGLRILIHTFKASAKELTLLVFFL 418
                     .:.::::|....:|.|..|:.:||   |.|||.||:.|..|.:...:|..||:.||
 Frog   317 SGGKTGGAGNNYLEKVGLVLRVLRALRILYVMR---LARHSLGLQTLGLTVRRCTREFGLLLLFL 378

  Fly   419 VLGIVFFASLAYYAEKLQDNPDNQFKSIPLGLWWAIVTMTTVGYGDVAPKTYPGMFVGALCALAG 483
            .:.:..|:.|.|.||. :.....:|.|||...|||:::||||||||:.|::.||..|.....|:|
 Frog   379 CVAMALFSPLVYLAEN-ELGAKQEFTSIPGSYWWAVISMTTVGYGDMVPRSIPGQVVALSSILSG 442

  Fly   484 VLTIALPVPVIVSNFSMFYSHTQARSKLPKKRRRVLPVEQPRRKREP 530
            :|.:|.||..|...||.  |:|:.:.:..:..|::..:|.    |||
 Frog   443 ILLMAFPVTSIFHTFSR--SYTELKEQQQRASRQIPRLED----REP 483

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShawlNP_001097131.2 BTB 7..99 CDD:197585 38/101 (38%)
BTB_2 7..97 CDD:280393 37/99 (37%)
Ion_trans 307..506 CDD:278921 71/215 (33%)
Ion_trans_2 <449..499 CDD:285168 22/49 (45%)
kcng2XP_017950308.2 BTB_POZ_KCNG1_2 58..171 CDD:349728 43/129 (33%)
Ion_trans 222..465 CDD:395416 87/355 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

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