DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shawl and kcns3

DIOPT Version :9

Sequence 1:NP_001097131.2 Gene:Shawl / 5740840 FlyBaseID:FBgn0085395 Length:937 Species:Drosophila melanogaster
Sequence 2:XP_031758930.1 Gene:kcns3 / 100497261 XenbaseID:XB-GENE-952059 Length:490 Species:Xenopus tropicalis


Alignment Length:531 Identity:153/531 - (28%)
Similarity:236/531 - (44%) Gaps:149/531 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 ENRIILNVSGIRYETYKATLKKIPATRLSRL---------TEALANYDPVLNEYFFDRHPGVFTQ 59
            |..:.|||.|.:....:.||.:.|.|||.:|         .|...:|:....||:|||:|.:|..
 Frog    14 EELVKLNVGGFKQSVDQKTLLRFPHTRLGKLLNCRSEEAILELCDDYNVADKEYYFDRNPSLFRY 78

  Fly    60 ILNYYRTGKLHYPTDVCGPLFEEELEFWGLDSNQVEPCCWSTYSIHRDTQNTLAILD---KLDIE 121
            |||:|.|||||...::|...|.:|:|:||::...::.||.:.|   ::.:..:|..|   |.||.
 Frog    79 ILNFYYTGKLHVMEELCVFSFSQEIEYWGINELFIDSCCSNKY---QEKKEIIAEKDWDQKSDII 140

  Fly   122 NEKPTEEQIARLFGFE----EALSNGELNCWQRIKPKIWAMFDEPSSSTGAKIVAGMSVFFIFVS 182
            :...:....:.:|..|    :.|..|:      |:.|||...:.|:.|..||:.|..|:..:..|
 Frog   141 SLGSSSSDQSSVFERELEMFDTLKFGD------IRRKIWIRLENPAYSLSAKLFAIASLSVVLTS 199

  Fly   183 VISFCLKTHPGFRVDLPSGAHDAHGPGAGGPPHGHDPMGEPPQTHQYHQHSITPPSGSIGPTFRV 247
            :::.|:.:.|.|:                                                    
 Frog   200 IVAMCIHSMPEFK---------------------------------------------------- 212

  Fly   248 TNYTSYSSGNFTASGQATPIATIKGGQRQRLKRNINGSILNEFIEEKILGHNGRRKHGWIETYGQ 312
                                         :|..|      :..:|:.:|.               
 Frog   213 -----------------------------KLDAN------DRELEDPVLA--------------- 227

  Fly   313 PHEAFFYVELVCNVWFFIEVIIRLIVSPNLWQFIKSPVNIIDFTATLSFY----TDV-------M 366
                  .||:||.:||..|::|||||:|:..:|.|:|:|||||.:.:.||    .||       :
 Frog   228 ------VVEIVCIIWFTSELVIRLIVAPSQKKFWKNPMNIIDFVSIIPFYATLVVDVNDEENEGI 286

  Fly   367 QRMGEYTGLLEAFSIVRIMRLFKLTRHSPGLRILIHTFKASAKELTLLVFFLVLGIVFFASLAYY 431
            :.||:...:|.   ::||.|:.||.|||.|||.|..|.|.|..|:.||:.||.:||..|:.|.||
 Frog   287 ENMGKVVQILR---LMRIFRILKLARHSVGLRSLGATLKHSYHEVGLLLLFLAVGISIFSVLVYY 348

  Fly   432 AEKLQDNPDNQFKSIPLGLWWAIVTMTTVGYGDVAPKTYPGMFVGALCALAGVLTIALPVPVIVS 496
            .||  |...:...|||:..|||.::||||||||..|.|..|..||.:|.:.|:|.:|||:.:|.:
 Frog   349 VEK--DEDQSGLHSIPMCWWWATISMTTVGYGDTHPVTLFGKLVGTVCIICGILVVALPITIIFN 411

  Fly   497 NFSMFYSHTQA 507
            .||.:|...:|
 Frog   412 KFSKYYQKQKA 422

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShawlNP_001097131.2 BTB 7..99 CDD:197585 36/100 (36%)
BTB_2 7..97 CDD:280393 35/98 (36%)
Ion_trans 307..506 CDD:278921 86/209 (41%)
Ion_trans_2 <449..499 CDD:285168 23/49 (47%)
kcns3XP_031758930.1 BTB_POZ_KCNS3 15..122 CDD:349735 38/109 (35%)
Ion_trans 185..421 CDD:395416 98/348 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D818306at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.920

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