DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shawl and kcng4

DIOPT Version :9

Sequence 1:NP_001097131.2 Gene:Shawl / 5740840 FlyBaseID:FBgn0085395 Length:937 Species:Drosophila melanogaster
Sequence 2:XP_002934997.1 Gene:kcng4 / 100497160 XenbaseID:XB-GENE-985941 Length:506 Species:Xenopus tropicalis


Alignment Length:576 Identity:144/576 - (25%)
Similarity:227/576 - (39%) Gaps:175/576 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 DGENRIILNVSGIRYETYKATLKKIPATRLSRL---------TEALANYDPVLNEYFFDRHPGVF 57
            |.:..||:||.||:|....:||.:.|.|||.:|         .:...::|...||:||||:|..|
 Frog    57 DLKREIIINVGGIKYLMPWSTLDEFPMTRLGKLRFCSSYEEIIQICDDFDEDTNEFFFDRNPCAF 121

  Fly    58 TQILNYYRTGKLHYPTDVCGPLFEEELEFWGLDSNQVEPCCWSTYSIHRDTQNTLAILDKLDIEN 122
            :.|:::...|||....::|...|::||.:||::.:::|.||            ...:..||    
 Frog   122 SMIVSFLAAGKLRLLREMCALSFQDELTYWGIEESKLERCC------------LRKLFQKL---- 170

  Fly   123 EKPTEEQIARLFGFEEALSNGELNCWQRIKPKIW-------AMFDEPSSSTGAKIVAGMSVFFIF 180
                 |::|.:...|||..|.|..|......|:.       .|.:.|.|....|:.|.:|:.|:.
 Frog   171 -----EELAEIRKEEEAQRNRETICVLEDNTKVGHCMGKLRDMVENPQSGIPGKVFACLSIIFVA 230

  Fly   181 VSVISFCLKTHPGFRVDLPSGAHDAHGPGAGGPPHGHDPMGEPPQTHQYHQHSITPPSGSIGPTF 245
            .:.|:.|:.|.|..|.:                    :..||..|                    
 Frog   231 TTAINLCVSTMPDLRAE--------------------EDRGECSQ-------------------- 255

  Fly   246 RVTNYTSYSSGNFTASGQATPIATIKGGQRQRLKRNINGSILNEFIEEKILGHNGRRKHGWIETY 310
                                                              :.:|           
 Frog   256 --------------------------------------------------MCYN----------- 259

  Fly   311 GQPHEAFFYVELVCNVWFFIEVIIRLIVSPNLWQFIKSPVNIIDFTATLSFYTDV---------- 365
                  .|.:|.:|..||.:|..:|.|.:.:..||.|.|:||||..|.|.:|..:          
 Frog   260 ------IFIIETICVAWFSLEFFLRFIQAKSKCQFFKGPLNIIDVLAILPYYVSLIVEDEQKTVD 318

  Fly   366 -------MQRMGEYTGLLEAFSIVRIMRLFKLTRHSPGLRILIHTFKASAKELTLLVFFLVLGIV 423
                   ::::|....:|.|..|:.:||   |.|||.||:.|..|.:...:|..||:.||.:.:.
 Frog   319 KPSSNSYLEKIGLVLRVLRALRILYVMR---LARHSLGLQTLGLTVRRCTREFGLLLLFLCVAVT 380

  Fly   424 FFASLAYYAEKLQDNPDNQFKSIPLGLWWAIVTMTTVGYGDVAPKTYPGMFVGALCALAGVLTIA 488
            .||.|.:.||. :.....:|.|:|...||||::||||||||:.|::.||..|.....|:|:|.:|
 Frog   381 LFAPLVHLAEN-EMGRCQEFTSVPASYWWAIISMTTVGYGDMVPRSIPGQVVALSSILSGILIMA 444

  Fly   489 LPVPVIVSNFSMFYSHTQARSKLPKKRRRVLPVEQPRRKREPTAPHRGRTNAIKQT 544
            .|...|...||..|      |:|.:::.|:    |.|..|...|...|.::....|
 Frog   445 FPATSIFHTFSRCY------SELKREQERL----QSRLMRLKDANQSGESDTFNDT 490

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShawlNP_001097131.2 BTB 7..99 CDD:197585 35/100 (35%)
BTB_2 7..97 CDD:280393 34/98 (35%)
Ion_trans 307..506 CDD:278921 71/215 (33%)
Ion_trans_2 <449..499 CDD:285168 22/49 (45%)
kcng4XP_002934997.1 BTB_POZ_KCNG4 59..170 CDD:349730 36/122 (30%)
Ion_trans 219..462 CDD:366146 85/359 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

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