DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shawl and kcns1

DIOPT Version :9

Sequence 1:NP_001097131.2 Gene:Shawl / 5740840 FlyBaseID:FBgn0085395 Length:937 Species:Drosophila melanogaster
Sequence 2:XP_002938059.3 Gene:kcns1 / 100492665 XenbaseID:XB-GENE-6051189 Length:451 Species:Xenopus tropicalis


Alignment Length:536 Identity:138/536 - (25%)
Similarity:229/536 - (42%) Gaps:139/536 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 ENRIILNVSGIRYETYKATLKKIPATRLSRL---------TEALANYDPVLNEYFFDRHPGVFTQ 59
            ::.|.:||.|::......||.:.|.|||.||         .:...:||.|..|::|||:||:|..
 Frog    15 DHSININVGGMKKRISPITLLQFPDTRLGRLLSCDSEESILQICDDYDLVSKEFYFDRNPGLFPY 79

  Fly    60 ILNYYRTGKLHYPTDVCGPLFEEELEFWGLDSNQVEPCCWSTYSIH-RDTQNTLAILDKLDIENE 123
            :|.:|.|||||...|:|...|.:|:|:||:....::.||  :|..| |..::.....|  :..:.
 Frog    80 VLYFYETGKLHMMDDLCAFSFSQEIEYWGISEFFLDSCC--SYRYHERKLESRRRNWD--EDSDA 140

  Fly   124 KPTEEQIARLFGF-EEALSNGELNCWQRIKPKIWAMFDEPSSSTGAKIVAGMSVFFIFVSVISFC 187
            ...|..:..:..| ::.:....:.| ..::.::|...:.|..|..:||.:.:|:..:.:|:.:.|
 Frog   141 SSIETSVDEISDFNQDIMYFDNVQC-GNLRKRLWLTMENPGYSIPSKIFSFISICVVLISISTMC 204

  Fly   188 LKTHPGFRVDLPSGAHDAHGPGAGGPPHGHDPMGEPPQTHQYHQ--HSITPPSGSIGPTFRVTNY 250
            :.:.|                                   :|.|  ..:.|              
 Frog   205 INSMP-----------------------------------EYQQVDEDLAP-------------- 220

  Fly   251 TSYSSGNFTASGQATPIATIKGGQRQRLKRNINGSILNEFIEEKILGHNGRRKHGWIETYGQPHE 315
                                                    :::.||                 |:
 Frog   221 ----------------------------------------VDDPIL-----------------HK 228

  Fly   316 AFFYVELVCNVWFFIEVIIRLIVSPNLWQFIKSPVNIIDFTATLSFYTDVM--------QRMGEY 372
                :|..|..||..||..||:::|||.:|.:.|:|:||..:.|.||..:.        ..:|..
 Frog   229 ----LEYFCISWFTFEVSSRLLLAPNLKKFFRHPLNLIDIVSVLPFYITLFIDLTFGSDYELGNV 289

  Fly   373 TGLLEAFSIVRIMRLFKLTRHSPGLRILIHTFKASAKELTLLVFFLVLGIVFFASLAYYAEKLQD 437
            ..:::.|.::||.|:.||.|||.|||.|..|.|.|.:|:.:|:.:|.:|:..|:.:||.||.   
 Frog   290 GKVVQVFRLMRIFRVLKLARHSTGLRSLGATLKHSYREVGILLLYLAVGVSVFSGMAYTAEM--- 351

  Fly   438 NPDNQFKSIPLGLWWAIVTMTTVGYGDVAPKTYPGMFVGALCALAGVLTIALPVPVIVSNFSMFY 502
            :.|..|.:||...||..|:|||||||||.|.|..|....:.|.|.|:|.:|||:.:|.:.||.||
 Frog   352 DEDTGFDTIPSCWWWGTVSMTTVGYGDVVPVTVAGKLAASGCILGGILVVALPITIIFNKFSHFY 416

  Fly   503 SHTQARSKLPKKRRRV 518
            ...:|.....:...|:
 Frog   417 RRQKALENAVRNSDRI 432

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShawlNP_001097131.2 BTB 7..99 CDD:197585 37/100 (37%)
BTB_2 7..97 CDD:280393 36/98 (37%)
Ion_trans 307..506 CDD:278921 77/206 (37%)
Ion_trans_2 <449..499 CDD:285168 23/49 (47%)
kcns1XP_002938059.3 BTB_POZ_KCNS1 18..123 CDD:349733 39/106 (37%)
Ion_trans 185..420 CDD:395416 88/347 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D818306at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.920

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