DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shawl and kcna7

DIOPT Version :9

Sequence 1:NP_001097131.2 Gene:Shawl / 5740840 FlyBaseID:FBgn0085395 Length:937 Species:Drosophila melanogaster
Sequence 2:XP_002939286.2 Gene:kcna7 / 100491458 XenbaseID:XB-GENE-992813 Length:489 Species:Xenopus tropicalis


Alignment Length:518 Identity:169/518 - (32%)
Similarity:239/518 - (46%) Gaps:161/518 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 RIILNVSGIRYETYKATLKKIPATRLSRLTEALANYDPVLNEYFFDRHPGVFTQILNYYRT-GKL 69
            |:::||||:|:||...||.:.|.|.|......:..:||:.|||||||:...|..||.:|:: |:|
 Frog    37 RVVINVSGLRFETQIRTLHRFPDTLLGDPRRRIHFFDPLRNEYFFDRNRPCFDSILYFYQSGGRL 101

  Fly    70 HYPTDVCGPLFEEELEFWGLDSNQVEPCCWSTYSIHRDTQNTLAILDKLDIENEKPTEEQIARLF 134
            ..||:|...:|.|||.|:.|..|                                     :.|.|
 Frog   102 RRPTNVPLDVFMEELLFYQLGDN-------------------------------------VIRKF 129

  Fly   135 GFEEALSNGELNCWQRIKP------KIWAMFDEPSSSTGAKIVAGMSVFFIFVSVISFCLKTHPG 193
            ..:|.....|    :|:.|      ::|.:|:.|.||:.|:|:|.:||..|.:|::.|||:|.|.
 Frog   130 REDEGFMKEE----ERLLPECEFMKQVWLLFEHPDSSSAARIIAIISVMVILISIVIFCLETLPE 190

  Fly   194 FRVD----LPSGAHDAHGPGAGGPPHGHDPMGEPPQTHQYHQHSITPPSGSIGPTFRVTNYTSYS 254
            ||.|    ||...|.|:                  .||.:.:.|                     
 Frog   191 FRDDRDLSLPVAPHRAN------------------STHHFKEKS--------------------- 216

  Fly   255 SGNFTASGQATPIATIKGGQRQRLKRNINGSILNEFIEEKILGHNGRRKHGWIETYGQPHE-AFF 318
                                                                      |.| .||
 Frog   217 ----------------------------------------------------------PFEDPFF 223

  Fly   319 YVELVCNVWFFIEVIIRLIVSPNLWQFIKSPVNIIDFTATLSFYTDVMQRMGEYTG--------- 374
            .||.:|..||..|:.:|.|..|:...|.|..:|:|||.|.:.::..:...:..:.|         
 Frog   224 IVETICICWFSFELSVRFIACPSKAAFFKDIMNMIDFVAIIPYFVALGTELARHKGVGQPAMSLA 288

  Fly   375 LLEAFSIVRIMRLFKLTRHSPGLRILIHTFKASAKELTLLVFFLVLGIVFFASLAYYAEKLQDNP 439
            :|....:||:.|:|||:|||.||:||..|.|||.:||.||:|||.:|::.|:|..|:||  .|:.
 Frog   289 ILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAE--ADHE 351

  Fly   440 DNQFKSIPLGLWWAIVTMTTVGYGDVAPKTYPGMFVGALCALAGVLTIALPVPVIVSNFSMFY 502
            |.:|.|||...|||:||||||||||::|:|..|..||:|||:||||||:|||||||||||.||
 Frog   352 DTKFTSIPEAFWWAVVTMTTVGYGDMSPETVGGKLVGSLCAIAGVLTISLPVPVIVSNFSYFY 414

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShawlNP_001097131.2 BTB 7..99 CDD:197585 37/92 (40%)
BTB_2 7..97 CDD:280393 37/90 (41%)
Ion_trans 307..506 CDD:278921 98/206 (48%)
Ion_trans_2 <449..499 CDD:285168 36/49 (73%)
kcna7XP_002939286.2 BTB_POZ 36..162 CDD:365784 47/165 (28%)
Ion_trans 165..417 CDD:366146 120/349 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D818306at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

Return to query results.
Submit another query.