DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shawl and kcnb2

DIOPT Version :9

Sequence 1:NP_001097131.2 Gene:Shawl / 5740840 FlyBaseID:FBgn0085395 Length:937 Species:Drosophila melanogaster
Sequence 2:XP_002937117.3 Gene:kcnb2 / 100489419 XenbaseID:XB-GENE-989392 Length:901 Species:Xenopus tropicalis


Alignment Length:540 Identity:179/540 - (33%)
Similarity:252/540 - (46%) Gaps:149/540 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 RIILNVSGIRYETYKATLKKIPATRLSR---------LTEALANYDPVLNEYFFDRHPGVFTQIL 61
            |:.:||.|:.:|....||.::|.|||.:         |.|...:|:...||||||||||.||.||
 Frog    36 RVKINVGGLNHEVLWRTLDRLPRTRLGKLRDCNTHESLLEVCDDYNLNENEYFFDRHPGAFTSIL 100

  Fly    62 NYYRTGKLHYPTDVCGPLFEEELEFWGLDSNQVEPCCWSTYSIHRDTQNTLAILDKLDIENEKPT 126
            |:|||||||...::|...|.:||::||:|...:|.||.:.|...::..|     ::|..|.|...
 Frog   101 NFYRTGKLHMMEEMCALSFGQELDYWGIDEIYLESCCQARYHQKKEQMN-----EELRREAETLR 160

  Fly   127 EEQIARLFGFEEALSNGELNCWQRIKPKIWAMFDEPSSSTGAKIVAGMSVFFIFVSVISFCLKTH 191
            |.:       .|...|   .|....:.|:|.:.::|:||..|||:|.:|:.||.:|.|:..|.|.
 Frog   161 ERE-------GEEFDN---TCCPEKRKKLWDLLEKPNSSVAAKILAIISILFIVLSTIALSLNTL 215

  Fly   192 PGFRVDLPSGAHDAHGPGAGGPPHGHDPMGEPPQTHQYHQHSITPPSGSIGPTFRVTNYTSYSSG 256
            |    ||                                                          
 Frog   216 P----DL---------------------------------------------------------- 218

  Fly   257 NFTASGQATPIATIKGGQRQRLKRNINGSILNEFIEEKILGHNGRRKHGWIETYGQPHE--AFFY 319
                  |.|                                          :.:|||::  ...:
 Frog   219 ------QET------------------------------------------DEFGQPNDNPQLAH 235

  Fly   320 VELVCNVWFFIEVIIRLIVSPNLWQFIKSPVNIIDFTATLSFYTDV--------MQRMGEYTGLL 376
            ||.||..||.:|.::|.:.|||.|:|.|.|:||||..|.|.:|..:        :.:......::
 Frog   236 VEAVCIAWFTMEYLLRFLSSPNKWKFFKGPLNIIDLLAILPYYVTIFLTESNKSVLQFQNVRRVV 300

  Fly   377 EAFSIVRIMRLFKLTRHSPGLRILIHTFKASAKELTLLVFFLVLGIVFFASLAYYAEKLQDNPDN 441
            :.|.|:||:|:.||.|||.||:.|..|.:.|..||.||:.||.:||:.|:||.::|||  |....
 Frog   301 QIFRIMRILRILKLARHSTGLQSLGFTLRRSYNELGLLILFLAMGIMIFSSLVFFAEK--DEDAT 363

  Fly   442 QFKSIPLGLWWAIVTMTTVGYGDVAPKTYPGMFVGALCALAGVLTIALPVPVIVSNFSMFYSHTQ 506
            :|.|||...|||.:|||||||||:.|||..|..||.||.:||||.||||:|:||:|||.||.. |
 Frog   364 KFTSIPASFWWATITMTTVGYGDIYPKTLLGKIVGGLCCIAGVLVIALPIPIIVNNFSEFYKE-Q 427

  Fly   507 ARSKLPKKRRRVLPVEQPRR 526
            .|.:...|||..|  |:.:|
 Frog   428 KRQEKAIKRREAL--ERAKR 445

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShawlNP_001097131.2 BTB 7..99 CDD:197585 44/100 (44%)
BTB_2 7..97 CDD:280393 43/98 (44%)
Ion_trans 307..506 CDD:278921 95/208 (46%)
Ion_trans_2 <449..499 CDD:285168 32/49 (65%)
kcnb2XP_002937117.3 BTB_POZ_KCNB2 19..145 CDD:349719 47/108 (44%)
Ion_trans 192..428 CDD:366146 111/348 (32%)
Kv2channel 471..755 CDD:367541
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.910

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