DRSC/TRiP Functional Genomics Resources

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Protein Alignment Shawl and kcnb1

DIOPT Version :10

Sequence 1:NP_001097131.2 Gene:Shawl / 5740840 FlyBaseID:FBgn0085395 Length:937 Species:Drosophila melanogaster
Sequence 2:XP_031750650.1 Gene:kcnb1 / 100489405 XenbaseID:XB-GENE-982937 Length:875 Species:Xenopus tropicalis


Alignment Length:538 Identity:182/538 - (33%)
Similarity:251/538 - (46%) Gaps:145/538 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 RIILNVSGIRYETYKATLKKIPATRLSR---------LTEALANYDPVLNEYFFDRHPGVFTQIL 61
            |:.|||.|:.:|....||.::|.|||.:         |.|...:|:...||||||||||.||.||
 Frog    32 RVKLNVGGLAHEVLWRTLDRLPRTRLGKLRDCNTHECLMEICDDYNLEENEYFFDRHPGAFTSIL 96

  Fly    62 NYYRTGKLHYPTDVCGPLFEEELEFWGLDSNQVEPCCWSTYSIHRDTQNTLAILDKLDIENEKPT 126
            |:|||||||...::|...|.:||::||:|...:|.||.:.|...::..|     ::|..|.|...
 Frog    97 NFYRTGKLHMMEEMCALSFSQELDYWGIDEIYLESCCQARYHQKKEQMN-----EELKREAETLR 156

  Fly   127 EEQIARLFGFEEALSNGELNCWQRIKPKIWAMFDEPSSSTGAKIVAGMSVFFIFVSVISFCLKTH 191
            |.:       .|...|   .|....:.|:|.:.::|:||..|||:|.:|:.||.:|.|:..|.|.
 Frog   157 ERE-------GEEFDN---TCCADKRKKLWDLLEKPNSSVAAKILAIISILFIVLSTIALSLNTL 211

  Fly   192 PGFRVDLPSGAHDAHGPGAGGPPHGHDPMGEPPQTHQYHQHSITPPSGSIGPTFRVTNYTSYSSG 256
            |    ||                .|.|..|:.....|                            
 Frog   212 P----DL----------------QGIDEFGQTTDNPQ---------------------------- 228

  Fly   257 NFTASGQATPIATIKGGQRQRLKRNINGSILNEFIEEKILGHNGRRKHGWIETYGQPHEAFFYVE 321
                                                   |.|                     ||
 Frog   229 ---------------------------------------LAH---------------------VE 233

  Fly   322 LVCNVWFFIEVIIRLIVSPNLWQFIKSPVNIIDFTATLSFYTDV--------MQRMGEYTGLLEA 378
            .||..||.:|.::|.:.|||.|:|.|.|:|:||..|.|.:|..:        :.:......:::.
 Frog   234 AVCIAWFTMEYLLRFLSSPNKWKFFKGPLNVIDLLAILPYYVTIFLTESNKSVLQFQNVRRVVQI 298

  Fly   379 FSIVRIMRLFKLTRHSPGLRILIHTFKASAKELTLLVFFLVLGIVFFASLAYYAEKLQDNPDNQF 443
            |.|:||:|:.||.|||.||:.|..|.:.|..||.||:.||.:||:.|:||.::|||  |..|.:|
 Frog   299 FRIMRILRILKLARHSTGLQSLGFTLRRSYNELGLLILFLAMGIMIFSSLVFFAEK--DEEDTKF 361

  Fly   444 KSIPLGLWWAIVTMTTVGYGDVAPKTYPGMFVGALCALAGVLTIALPVPVIVSNFSMFYSHTQAR 508
            ||||...|||.:|||||||||:.|||..|..||.||.:||||.||||:|:||:|||.||.. |.|
 Frog   362 KSIPASFWWATITMTTVGYGDIYPKTLLGKIVGGLCCIAGVLVIALPIPIIVNNFSEFYKE-QKR 425

  Fly   509 SKLPKKRRRVLPVEQPRR 526
            .:...|||..|  |:.:|
 Frog   426 QEKAIKRREAL--ERAKR 441

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShawlNP_001097131.2 BTB_Shaw-like 4..115 CDD:349723 49/117 (42%)
Ion_trans 307..506 CDD:459842 93/206 (45%)
kcnb1XP_031750650.1 BTB_POZ_KCNB2 15..141 CDD:349719 48/108 (44%)
Ion_trans 188..424 CDD:459842 113/346 (33%)
Kv2channel 467..720 CDD:397541
Blue background indicates that the domain is not in the aligned region.

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