DRSC/TRiP Functional Genomics Resources

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Protein Alignment Shawl and kcnc2

DIOPT Version :9

Sequence 1:NP_001097131.2 Gene:Shawl / 5740840 FlyBaseID:FBgn0085395 Length:937 Species:Drosophila melanogaster
Sequence 2:XP_002939991.2 Gene:kcnc2 / 100489216 XenbaseID:XB-GENE-1013657 Length:598 Species:Xenopus tropicalis


Alignment Length:553 Identity:224/553 - (40%)
Similarity:300/553 - (54%) Gaps:128/553 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDGENRIILNVSGIRYETYKATLKKIPATRLSRL--------------TEALANYDPVLNEYFFD 51
            :|...||||||.|.|:|||::|||.:|.|||:.|              .....|.....||:|||
 Frog     4 IDENERIILNVGGTRHETYRSTLKTVPGTRLALLACESQSEQGLDQQTVSGSFNITSRGNEFFFD 68

  Fly    52 RHPGVFTQILNYYRTGKLHYPTDVCGPLFEEELEFWGLDSNQVEPCCWSTYSIHRDTQNTLAILD 116
            ||||||..:||||||||||.|.|||||||||||.|||:|...||||||.||..|||.:..|.|.:
 Frog    69 RHPGVFAYVLNYYRTGKLHCPADVCGPLFEEELAFWGIDETDVEPCCWMTYRQHRDAEEALDIFE 133

  Fly   117 KLDIENEKPT-----EEQIARLFGFEEAL-SNGELNCWQRIKPKIWAMFDEPSSSTGAKIVAGMS 175
            ..|:...:|.     ||.:.:....|:.: .:|::..|:|::|::||:|::|.||..|:.:|..|
 Frog   134 TPDLITGEPPPIDEYEEDLGKRLAIEDVVCPDGKVGRWRRLQPRMWALFEDPYSSRAARFIAFAS 198

  Fly   176 VFFIFVSVISFCLKTHPGFRVDLPSGAHDAHGPGAGGPPHGHDPMGEPPQTHQYHQHSITPPSGS 240
            :|||.||:.:|||:||..|..                                            
 Frog   199 LFFILVSITTFCLETHEAFNT-------------------------------------------- 219

  Fly   241 IGPTFRVTNYTSYSSGNFTASGQATPIATIKGGQRQRLKRNINGSILNEFIEEKILGHNGRRKHG 305
                  :.|.|.                |:.           ||:.|...||             
 Frog   220 ------IINKTE----------------TVN-----------NGTELISLIE------------- 238

  Fly   306 WIETYGQPHEAFFYVELVCNVWFFIEVIIRLIVSPNLWQFIKSPVNIIDFTATLSFYTDV----- 365
             |||    ..|..|||.||.|||..|.::|:|..|:..:||::.:|||||.|.|.||.:|     
 Frog   239 -IET----DPALTYVEGVCVVWFTFEFLVRVIFCPDKLEFIRNLLNIIDFVAILPFYLEVGLSGL 298

  Fly   366 -MQRMGEYTGLLEAFSIVRIMRLFKLTRHSPGLRILIHTFKASAKELTLLVFFLVLGIVFFASLA 429
             .:...:..|.|.....|||:|:||||||..|||:|.||.:||..|..||:.||.||::.||::.
 Frog   299 SSKAAKDVLGFLRVVRFVRILRIFKLTRHFVGLRVLGHTLRASTNEFLLLIIFLALGVLIFATMI 363

  Fly   430 YYAEKLQDNPDN-------QFKSIPLGLWWAIVTMTTVGYGDVAPKTYPGMFVGALCALAGVLTI 487
            ||||::..:|.:       |||:||:|.|||:|||||:||||:.|:|:.||.|||||||||||||
 Frog   364 YYAERIGASPSDPSASKHTQFKNIPIGFWWAVVTMTTLGYGDMYPQTWSGMLVGALCALAGVLTI 428

  Fly   488 ALPVPVIVSNFSMFYSHTQARSKLPKKRRRVLP 520
            |:||||||:||.|:||...|:.|||:||::.:|
 Frog   429 AMPVPVIVNNFGMYYSLAMAKQKLPRKRKKYIP 461

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShawlNP_001097131.2 BTB 7..99 CDD:197585 60/105 (57%)
BTB_2 7..97 CDD:280393 58/103 (56%)
Ion_trans 307..506 CDD:278921 109/211 (52%)
Ion_trans_2 <449..499 CDD:285168 38/49 (78%)
kcnc2XP_002939991.2 BTB_KCNC2_4 7..129 CDD:349722 68/121 (56%)
Ion_trans 191..447 CDD:395416 131/350 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 247 1.000 Domainoid score I2104
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 458 1.000 Inparanoid score I1532
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D331021at33208
OrthoFinder 1 1.000 - - FOG0000990
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
66.060

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