DRSC/TRiP Functional Genomics Resources

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Protein Alignment Shawl and kcnd1

DIOPT Version :10

Sequence 1:NP_001097131.2 Gene:Shawl / 5740840 FlyBaseID:FBgn0085395 Length:937 Species:Drosophila melanogaster
Sequence 2:XP_031747765.1 Gene:kcnd1 / 100488387 XenbaseID:XB-GENE-6047565 Length:631 Species:Xenopus tropicalis


Alignment Length:513 Identity:163/513 - (31%)
Similarity:232/513 - (45%) Gaps:130/513 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDGENRIILNVSGIRYETYKATLKKIPATRLSRLTEALANYDPVLNEYFFDRHPGVFTQILNYYR 65
            |..:..:::||||.:::|:|.||.:.|.|.|.. ||....::....||||||.|.:|..|||:||
 Frog    36 MKSDEILVVNVSGRKFQTWKNTLDRYPDTLLGS-TEKDFFFNQDTQEYFFDRDPEMFRHILNFYR 99

  Fly    66 TGKLHYPTDVCGPLFEEELEFWGLDSNQVEPCCWSTYSIHRDTQNTLAILDKLDIENEKPTEEQI 130
            |||||||...|...|:|||.|:|:....:..||...|   ||.:                 :|.:
 Frog   100 TGKLHYPRHECIQAFDEELSFYGIIPEIIGDCCLEEY---RDRK-----------------KENL 144

  Fly   131 ARLFGFEEALSNGE--LNCWQRIKPKIWAMFDEPSSSTGAKIVAGMSVFFIFVSVISFCLKTHPG 193
            .||....||.:.|:  |......:.::|..|:.|.:||.|.:...::.|||.||||:..::|.| 
 Frog   145 ERLAEDTEAETAGDTPLPPDSTFRQRLWRAFENPHTSTMALVFYYVTGFFIAVSVIANVVETVP- 208

  Fly   194 FRVDLPSGAHDAHGPGAGGPPHGHDPMGEPPQTHQYHQHSITPPSGSIGPTFRVTNYTSYSSGNF 258
                                                    ..||:|                   
 Frog   209 ----------------------------------------CRPPAG------------------- 214

  Fly   259 TASGQATPIATIKGGQRQRLKRNINGSILNEFIEEKILGHNGRRKHGWIETYGQPHEAFFYVELV 323
                              |||....|                       |.|   :.||..::..
 Frog   215 ------------------RLKELPCG-----------------------EKY---NLAFVCMDTA 235

  Fly   324 CNVWFFIEVIIRLIVSPNLWQFIKSPVNIIDFTATLSFYTD-VMQRMGEYTGLLEAFSIVRIMRL 387
            |.:.|..|.::||..:|:..:|::|.::|||..|.:.||.. ||......:|......:.|:.|:
 Frog   236 CVLIFTFEYLMRLFAAPSRCKFMRSVMSIIDVVAIMPFYIGLVMPENENVSGAFVTLRVFRVFRI 300

  Fly   388 FKLTRHSPGLRILIHTFKASAKELTLLVFFLVLGIVFFASLAYYAEKLQDNPDNQFKSIPLGLWW 452
            ||.:|||.|||||.:|.|:.|.||..|:|.|.:.|:.||::.:||||  .....:|.|||...|:
 Frog   301 FKFSRHSQGLRILGYTLKSCASELGFLLFSLTMAIIIFATVMFYAEK--GTSKTKFTSIPAAFWY 363

  Fly   453 AIVTMTTVGYGDVAPKTYPGMFVGALCALAGVLTIALPVPVIVSNFSMFYSHTQARSK 510
            .||||||:||||:.|.|..|...|::|:|:|||.|||||||||||||..|...|...|
 Frog   364 TIVTMTTLGYGDMVPDTIAGKIFGSICSLSGVLVIALPVPVIVSNFSRIYHQNQRADK 421

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShawlNP_001097131.2 BTB_Shaw-like 4..115 CDD:349723 45/110 (41%)
Ion_trans 307..506 CDD:459842 86/199 (43%)
kcnd1XP_031747765.1 BTB_POZ_KCND1 6..143 CDD:349724 46/127 (36%)
Ion_trans 184..415 CDD:459842 103/336 (31%)
DUF3399 466..542 CDD:463381
Blue background indicates that the domain is not in the aligned region.

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