DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shawl and kcng3

DIOPT Version :9

Sequence 1:NP_001097131.2 Gene:Shawl / 5740840 FlyBaseID:FBgn0085395 Length:937 Species:Drosophila melanogaster
Sequence 2:XP_002932441.1 Gene:kcng3 / 100485370 XenbaseID:XB-GENE-981630 Length:431 Species:Xenopus tropicalis


Alignment Length:534 Identity:142/534 - (26%)
Similarity:222/534 - (41%) Gaps:158/534 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 LNVSGIRYETYKATLKKIPATRLSRL---------TEALANYDPVLNEYFFDRHPGVFTQILNYY 64
            |||.|.||...:..:|..|..|:|||         .|...:||...||||||||...|..|:.|.
 Frog    10 LNVGGARYSFSQEVIKDFPLRRVSRLHGCSSEQDVLEVCDDYDQERNEYFFDRHSEAFGFIMMYV 74

  Fly    65 RTGKLHYPTDVCGPLFEEELEFWGLDSNQVEPCCW--------STYSIHRDTQNTLAILDKLDIE 121
            :.|||.:...:|...|..|:.:|||:.:|:|.||.        .||:...|....   .:..:::
 Frog    75 KYGKLRFVPQMCELSFYNEMIYWGLERSQLEYCCQRRLDERMSDTYTYMSDESKP---DESCNLK 136

  Fly   122 NEKPTEEQIARLFGFEEALSNGELNCWQRIKPKIWAMFDEPSSSTGAKIVAGMSVFFIFVSVISF 186
            :|:..::|        :..|:.:   |   |.::...|:||:||..|:|:|.:|:.|:.||::..
 Frog   137 DEQQQQQQ--------QGPSDKK---W---KERMRITFEEPTSSLAAQILAVISIIFVIVSMVVL 187

  Fly   187 CLKTHPGFRVDLPSGAHDAHGPGAGGPPHGHDPMGEPPQTHQYHQH----SITPPSGSIGPTFRV 247
            |..|.|.::.                           .|.|...:|    |:..|||        
 Frog   188 CASTLPDWKT---------------------------AQNHSAEEHRYTASLWEPSG-------- 217

  Fly   248 TNYTSYSSGNFTASGQATPIATIKGGQRQRLKRNINGSILNEFIEEKILGHNGRRKHGWIETYGQ 312
                                                                             
 Frog   218 ----------------------------------------------------------------- 217

  Fly   313 PHEAFFYVELVCNVWFFIEVIIRLIVSPNLWQFIKSPVNIIDFTATLSFYTDVMQRM--GEYTGL 375
                  .:|.:|..||..|.|:|.|||.:..:|:|.|:||||..|...:|..|:..:  ||...|
 Frog   218 ------IIEAICIGWFTAECIVRFIVSKDKCEFVKRPLNIIDLLAITPYYVSVLMTVFTGENPQL 276

  Fly   376 LEA---FSIVRIMRLF---KLTRHSPGLRILIHTFKASAKELTLLVFFLVLGIVFFASLAYYAEK 434
            ..|   ..::|:||:|   ||.||..||:.|..|.|...:|:.:|:.|:.:.:..|.:|:...|.
 Frog   277 QRAGVTLRVLRMMRIFWVIKLARHFIGLQTLGLTLKRCYREMVMLLVFICVAMAIFGALSQLLEH 341

  Fly   435 LQD----NPDNQFKSIPLGLWWAIVTMTTVGYGDVAPKTYPGMFVGALCALAGVLTIALPVPVIV 495
            ..|    |.|  :.|||...||.|::||||||||:.|.:.||..:|.:|.::|::.:|||:..|.
 Frog   342 GLDLEAKNED--YSSIPAACWWVIISMTTVGYGDMYPISVPGRILGGVCVVSGIVLLALPITFIY 404

  Fly   496 SNFSMFYSHTQARS 509
            .:|...|...:.:|
 Frog   405 HSFVQCYHELKFKS 418

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShawlNP_001097131.2 BTB 7..99 CDD:197585 38/98 (39%)
BTB_2 7..97 CDD:280393 37/96 (39%)
Ion_trans 307..506 CDD:278921 72/210 (34%)
Ion_trans_2 <449..499 CDD:285168 21/49 (43%)
kcng3XP_002932441.1 BTB_POZ_KCNG3 8..118 CDD:349729 39/107 (36%)
Ion_trans 169..415 CDD:366146 89/353 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D818306at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.920

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