DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shawl and si:dkey-43k4.5

DIOPT Version :9

Sequence 1:NP_001097131.2 Gene:Shawl / 5740840 FlyBaseID:FBgn0085395 Length:937 Species:Drosophila melanogaster
Sequence 2:XP_017212096.1 Gene:si:dkey-43k4.5 / 100148290 ZFINID:ZDB-GENE-120215-82 Length:487 Species:Danio rerio


Alignment Length:557 Identity:128/557 - (22%)
Similarity:234/557 - (42%) Gaps:142/557 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDGENRII-LNVSGIRYETYKATLKKIPATRLSRL---------TEALANYDPVLNEYFFDRHPG 55
            :|.::.:: :||.|:|.....:.|||.|.|||.:|         .:...::|....|::|||:||
Zfish    11 LDPKDHLLHINVGGLRNTLCSSILKKFPDTRLGQLLSCDSEDDILQLCDDFDVQRKEFYFDRNPG 75

  Fly    56 VFTQILNYYRTGKLHYPTDVCGPLFEEELEFWGLDSNQVEPCCWSTYSIHRDTQNTLAILDKLDI 120
            :|..:|::|:|||||...::|...|.:|:|:||:....::.||...|...:..::..:..::.|:
Zfish    76 LFPYVLHFYQTGKLHIMEELCIFSFSQEIEYWGISDFFLDSCCSYRYLDRKLERHHKSWDEESDV 140

  Fly   121 ENEKPTEEQIARLFGFEEALSNGELNCWQ-----RIKPKIWAMFDEPSSSTGAKIVAGMSVFFIF 180
            .:...:.::|:.|        |.::..:.     .|:..:|...:.|..|..:|:.:.:|:..:.
Zfish   141 SSVDTSVDEISDL--------NKDIEHFHEMRFGNIRKCLWLTLENPGYSIPSKLFSLLSICVVL 197

  Fly   181 VSVISFCLKTHPGFRVDLPSGAHDAHGPGAGGPPHGHDPMGEPPQTHQYHQHSITPPSGSIGPTF 245
            :|:.:.|:.:.|.::                                                  
Zfish   198 ISIATMCINSIPEYQ-------------------------------------------------- 212

  Fly   246 RVTNYTSYSSGNFTASGQATPIATIKGGQRQRLKRNINGSILNEFIEEKILGHNGRRKHGWIETY 310
                                             |.:.||:::.:                     
Zfish   213 ---------------------------------KFDENGNLIED--------------------- 223

  Fly   311 GQPHEAFFYVELVCNVWFFIEVIIRLIVSPNLWQFIKSPVNIIDFTATLSFYTDVM--------Q 367
                .....:|:.|..||..||:.|::::||..:|...|:|:||..:.:..|..:.        .
Zfish   224 ----PTMHVLEVFCICWFTFEVVTRMLLAPNHRKFFLLPLNVIDIISVMPIYITIFFDMLIGSES 284

  Fly   368 RMGEYTGLLEAFSIVRIMRLFKLTRHSPGLRILIHTFKASAKELTLLVFFLVLGIVFFASLAYYA 432
            .:|....|::...::||.|:.||.|||.|||.|..|.:.|.:|:.:|:.:|.:|:..|:.:||.|
Zfish   285 ELGNLGKLVQVLRLMRIFRVLKLARHSTGLRSLGATLRHSYREVGILLLYLAVGVSVFSGMAYTA 349

  Fly   433 EKLQDNPDNQFKSIPLGLWWAIVTMTTVGYGDVAPKTYPGMFVGALCALAGVLTIALPVPVIVSN 497
            |   :..|....:||...||..|:|||||||||.|.|..|....:.|.|.|.|.:|||:.:|.:.
Zfish   350 E---NEEDVGLDTIPACWWWGTVSMTTVGYGDVVPVTVAGKLAASGCILGGTLVVALPITIIFNK 411

  Fly   498 FSMFYSHTQARSKLPKKRRRVLPVEQPRRKREPTAPH 534
            ||.||...:|.....:.......|.:.:|....:|.|
Zfish   412 FSHFYRKQKALEASVRNNNNKKFVMRQQRNSGDSAIH 448

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShawlNP_001097131.2 BTB 7..99 CDD:197585 34/101 (34%)
BTB_2 7..97 CDD:280393 33/99 (33%)
Ion_trans 307..506 CDD:278921 70/206 (34%)
Ion_trans_2 <449..499 CDD:285168 23/49 (47%)
si:dkey-43k4.5XP_017212096.1 BTB_2 20..117 CDD:308049 33/96 (34%)
Ion_trans 185..420 CDD:306908 78/345 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D818306at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.910

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