DRSC/TRiP Functional Genomics Resources

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Protein Alignment DIP-delta and lrit1a

DIOPT Version :9

Sequence 1:NP_001097508.2 Gene:DIP-delta / 5740816 FlyBaseID:FBgn0085420 Length:469 Species:Drosophila melanogaster
Sequence 2:NP_001018174.2 Gene:lrit1a / 553943 ZFINID:ZDB-GENE-040924-5 Length:643 Species:Danio rerio


Alignment Length:362 Identity:83/362 - (22%)
Similarity:124/362 - (34%) Gaps:126/362 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    85 ILTIHRHVISRIP------RYSITYTD--------------NTWL----------------LHVN 113
            :|.||.:.:|.:|      ..:|||.|              ||||                ||.|
Zfish   135 LLDIHNNQLSSLPSEAALYMKNITYLDLSSNNLLTVPAEVLNTWLTIKPTLGAESSKLILGLHDN 199

  Fly   114 QAHQDDRGYYMCQVNTNPMISQVGYLQV---VVPPNILD----------------IESTPSSVAV 159
            ....|.|.|.:.|...:|.:| |.::..   ...|..|.                :.:..:.|..
Zfish   200 PWLCDCRLYDLVQFQKSPSLS-VAFIDTRLRCADPESLSGVLFSD
AELRRCQGPRVHTAVARVRS 263

  Fly   160 RENQNINMTCRADGFPAPKIIWRREDGE----EIAVEKKKKVLVYDADVLPLTKVSRNEMGAYLC 220
            ....|:.:.|...|.|.|::.|||.||:    .:.:|..|:.:|:  .:|.:..||..:.|.|:|
Zfish   264 AVGNNVLLRCGTVGVPIPELAWRRADGKPLNGTVLLENSKEGIVW--SILSVPAVSYRDTGKYIC 326

  Fly   221 IATN--GVPPSVSKRIILDVEFSPMIWVPNQLVGAPSGTDVTIDCHTEAHPKAIIYWVYNSVMVL 283
            .|||  |...:|...||.|               ||...:.|:|    ..||            |
Zfish   327 KATNYAGSAEAVISLII
ND---------------APKMENPTLD----PKPK------------L 360

  Fly   284 PSKK----YKTDYTENSYRAHMKLTIRNLQYGDFGNYRCISKNSLGETEGSIRVYEIPLPSTPSK 344
            .|||    .|..|.|.....::..|               .||.| ...|::. |..|.|...|.
Zfish   361 KSKKPNTMVKAAYQEKHIATYVSPT---------------PKNGL-PLSGTVS-YTGPYPGMESD 408

  Fly   345 QVTHTTVESR--------ENNIIPSSRNDTTKSLQTD 373
            ...::.:.::        |.|:...:.|  |.|||.|
Zfish   409 NAANSRMNTQTASPDGFLETNLSNLAAN--TSSLQQD 443

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-deltaNP_001097508.2 IG 51..143 CDD:214652 23/96 (24%)
Ig 145..238 CDD:416386 29/114 (25%)
Ig strand A 145..149 CDD:409353 1/3 (33%)
Ig strand A' 154..159 CDD:409353 1/4 (25%)
Ig strand B 165..172 CDD:409353 1/6 (17%)
Ig strand C 178..183 CDD:409353 1/4 (25%)
Ig strand C' 185..187 CDD:409353 1/1 (100%)
Ig strand D 195..199 CDD:409353 1/3 (33%)
Ig strand E 203..209 CDD:409353 1/5 (20%)
Ig strand F 216..223 CDD:409353 3/6 (50%)
Ig strand G 230..238 CDD:409353 3/7 (43%)
Ig 242..333 CDD:416386 18/94 (19%)
Ig strand A' 250..253 CDD:409353 0/2 (0%)
Ig strand B 259..266 CDD:409353 2/6 (33%)
Ig strand C 272..277 CDD:409353 0/4 (0%)
Ig strand C' 281..283 CDD:409353 0/1 (0%)
Ig strand D 289..293 CDD:409353 1/3 (33%)
Ig strand E 295..305 CDD:409353 0/9 (0%)
Ig strand F 314..322 CDD:409353 0/7 (0%)
Ig strand G 325..334 CDD:409353 1/8 (13%)
lrit1aNP_001018174.2 leucine-rich repeat 61..84 CDD:275378
LRR_8 63..119 CDD:290566
LRR_RI <77..175 CDD:238064 9/39 (23%)
leucine-rich repeat 85..108 CDD:275378
LRR_8 108..167 CDD:290566 9/31 (29%)
leucine-rich repeat 109..132 CDD:275378
leucine-rich repeat 133..156 CDD:275378 5/20 (25%)
leucine-rich repeat 157..170 CDD:275378 4/12 (33%)
LRRCT 199..243 CDD:214507 10/44 (23%)
I-set 252..343 CDD:254352 25/92 (27%)
Ig 259..333 CDD:299845 23/75 (31%)
fn3 448..515 CDD:278470
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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