DRSC/TRiP Functional Genomics Resources

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Protein Alignment DIP-delta and Dscam3

DIOPT Version :9

Sequence 1:NP_001097508.2 Gene:DIP-delta / 5740816 FlyBaseID:FBgn0085420 Length:469 Species:Drosophila melanogaster
Sequence 2:NP_996226.2 Gene:Dscam3 / 42103 FlyBaseID:FBgn0261046 Length:2087 Species:Drosophila melanogaster


Alignment Length:320 Identity:82/320 - (25%)
Similarity:122/320 - (38%) Gaps:44/320 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   121 GYYMCQV-NTNPMISQVGYLQVVVPPNILDIESTPSSVAVRENQNINMTCRADGFPAPKIIWRRE 184
            |.|.|.. |....::....|||.|.|.   ....|...|:.....|::.|.|:|:|.|.|.|.:.
  Fly   703 GKYTCYASNAAAKVNYTAELQV
RVAPR---WRYEPMDTAIMLGNTISINCEAEGYPIPTITWFKG 764

  Fly   185 DGEEIAVEKKKKVLVYDADVLPLTKVSRNEMGAYLCIATNGVPPSVSKRIILDVEFSPMIWVPNQ 249
            .|:.   .|..|.|......|.|...:.|:.|.|:|.|||.:...:.|.|.::|..........:
  Fly   765 QGKG---SKDFKPLSMRNHSLLLNLATDNDEGYYMCQATNEIGAGLKKTIRINV
NEPARFEQSAR 826

  Fly   250 LVGAPSGTDVTIDCHTEAHPKAIIYWVYNSVMVLPSKKYKTDYTENSYR---AHMK--------L 303
            .:.:.....||:|||.:......|.|..|:..:          ..|::|   |.||        |
  Fly   827 NISSRRNDPVTLDCHAKGDEPITIGWTQNNGRI----------DLNNFRFSIAEMKTEKGVDSQL 881

  Fly   304 TIRNLQYGDFGNYRCISKNSLGETEGSIRVYEIPLPSTPSK----QVTHTTVESRENNIIPSSRN 364
            ||.:....|.|.||||::|..|..|..|.:.....|.|||.    :|...||:.....  |...|
  Fly   882 TIGHSDRHDSGVYRCIAENPYGRAEQIIFLAVQERPDTPSHLEIFEVGSRTVKLSWRR--PFDGN 944

  Fly   365 ----------DTTKSLQTDVGYAMKNDLYPGSASSSSSGGSSSAASSSSSMQTSALPGGV 414
                      ...|.||:....|.....:.|...:.|...:|.:.|..|.::.||:..|:
  Fly   945 SPVLSYLVQYQALKYLQSHGSLAAAGGDWNGHVINVSLPSTSISRSYDSDLRESAIVAGL 1004

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-deltaNP_001097508.2 IG 51..143 CDD:214652 7/22 (32%)
Ig 145..238 CDD:416386 26/92 (28%)
Ig strand A 145..149 CDD:409353 1/3 (33%)
Ig strand A' 154..159 CDD:409353 1/4 (25%)
Ig strand B 165..172 CDD:409353 2/6 (33%)
Ig strand C 178..183 CDD:409353 2/4 (50%)
Ig strand C' 185..187 CDD:409353 0/1 (0%)
Ig strand D 195..199 CDD:409353 1/3 (33%)
Ig strand E 203..209 CDD:409353 2/5 (40%)
Ig strand F 216..223 CDD:409353 3/6 (50%)
Ig strand G 230..238 CDD:409353 2/7 (29%)
Ig 242..333 CDD:416386 26/101 (26%)
Ig strand A' 250..253 CDD:409353 0/2 (0%)
Ig strand B 259..266 CDD:409353 5/6 (83%)
Ig strand C 272..277 CDD:409353 2/4 (50%)
Ig strand C' 281..283 CDD:409353 0/1 (0%)
Ig strand D 289..293 CDD:409353 0/3 (0%)
Ig strand E 295..305 CDD:409353 6/20 (30%)
Ig strand F 314..322 CDD:409353 5/7 (71%)
Ig strand G 325..334 CDD:409353 3/8 (38%)
Dscam3NP_996226.2 IG 56..133 CDD:214652
Ig 56..125 CDD:143165
I-set 246..337 CDD:254352
Ig 264..334 CDD:143165
I-set 345..433 CDD:254352
Ig 358..431 CDD:143165
Ig 456..533 CDD:143165
IGc2 553..619 CDD:197706
I-set 634..724 CDD:254352 5/20 (25%)
ig 645..712 CDD:278476 3/8 (38%)
IG_like 734..815 CDD:214653 25/83 (30%)
Ig 745..815 CDD:299845 23/72 (32%)
I-set 820..913 CDD:254352 26/102 (25%)
Ig 838..920 CDD:299845 25/91 (27%)
FN3 917..1033 CDD:238020 21/90 (23%)
FN3 1040..1142 CDD:238020
fn3 1150..1237 CDD:278470
FN3 1263..1345 CDD:238020
Ig 1350..1436 CDD:299845
IG_like 1358..1436 CDD:214653
FN3 1441..1530 CDD:238020
FN3 1542..1620 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

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