DRSC/TRiP Functional Genomics Resources

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Protein Alignment DIP-delta and Dscaml1

DIOPT Version :9

Sequence 1:NP_001097508.2 Gene:DIP-delta / 5740816 FlyBaseID:FBgn0085420 Length:469 Species:Drosophila melanogaster
Sequence 2:NP_001101611.1 Gene:Dscaml1 / 315615 RGDID:1304887 Length:2111 Species:Rattus norvegicus


Alignment Length:589 Identity:122/589 - (20%)
Similarity:192/589 - (32%) Gaps:187/589 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 PRFAQPIPNVTVAVGRDANLPCVVEHLGGYKVAWIHIDRQMILTIHRHVISRIPRYSITYTDNTW 108
            |...:.:.|:|...|||..:.|.|.....|.:.| :.|..::...||.|:         :.:.|.
  Rat   563 PPSIRAMRNITAVAGRDTLINCRVIGYPYYSIKW-YKDALLLPDNHRQVV---------FENGTL 617

  Fly   109 LLHVNQAHQDDRGYYMCQVNTNPM--ISQVGYLQVVVPPNILDIESTP----------------- 154
            .|...|...|: |.|:|.|...|.  |||..::.|.|||.|...|..|                 
  Rat   618 KLTDVQKGMDE-GEYLCSVLIQPQLSISQSVHVAVKVPPLIQPFEFPPASIGQLLYIPCVVSSGD 681

  Fly   155 ---------------------------------SSVAVRENQNIN-------------------- 166
                                             |||:::.|.|..                    
  Rat   682 MPIRITWRKDGQVIISGSGVTIESKEFMSSLQISSVSLKHNGNYTCIASNAAATVSRERQLIVRV 746

  Fly   167 --------------------MTCRADGFPAPKIIWRREDGEEIAVEKKKKVLVYDADVLP----- 206
                                :.|..||:|.||::|:...|.....:.....|.....:||     
  Rat   747 PPRFVVQPNNQDGIYGKAGVLNCSVDGYPPPKVMWKHAKGSGNPQQYHPVPLTGRIQILPNSSLL 811

  Fly   207 LTKVSRNEMGAYLCIATNGVPPSVSKRIILDVEFSPMIWV-PNQLVGAPSGTDVTIDCHTEAHPK 270
            :..|...::|.|||.|:|||...:||.:.|.|:...||.. ||..: |..|....::|.......
  Rat   812 IRHVLEEDIGYYLCQASNGVGTDISKAMFLTVKIPAMITSHPNTTI-AIKGHAKELNCTARGERP 875

  Fly   271 AIIYWVYNSVMVLPSK--KYKTDYTENSYRAHMKLTIRNLQYGDFGNYRCISKNSLGETEGSIRV 333
            .||.|.....::.|.:  :|.....:|.......|.::....||...:.|.:.||.||..|.|::
  Rat   876 IIIRWEKGDTVIDPDRVMRYAIATKDNGDEVVSTLKLKPADRGDSVFFSCHAINSYGEDRGLIQL 940

  Fly   334 YEIPLPSTPSKQVTHTTVESRENNIIPSSRND-----------------------TTKSLQTDVG 375
            .....|..|..::..  |::|..|:..:.|.|                       :|:::...:.
  Rat   941 TVQEPPDPPELEIRE--VKARSMNLRWTQRFDGNSIITGFDIEYKNKSDSWDFKQSTRNISPTIN 1003

  Fly   376 YAMKNDLYPGSA------SSSSSGGSSSAASSSSSMQTSALPGG---------VAGNSL------ 419
            .|...||:|.|.      |.:..|.|..:...:.|.:.:| |.|         |...|:      
  Rat  1004 QANIVDLHPASVYSIRMYSFNKIGRSEPSKELTISTEEAA-PDGPPMDVTLQPVTSQSIQVTWKA 1067

  Fly   420 -------------------SSMGSKGSLAI------GKSTFYTERPPNEYAASSVAGLLLHRALL 459
                               :|.||.|..:|      |.|..||.....::|...|.....:||  
  Rat  1068 PKKELQNGIIRGYQIGYRENSPGSNGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRA-- 1130

  Fly   460 FGSG 463
             |:|
  Rat  1131 -GTG 1133

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-deltaNP_001097508.2 IG 51..143 CDD:214652 26/93 (28%)
Ig 145..238 CDD:416386 32/187 (17%)
Ig strand A 145..149 CDD:409353 2/3 (67%)
Ig strand A' 154..159 CDD:409353 4/54 (7%)
Ig strand B 165..172 CDD:409353 1/46 (2%)
Ig strand C 178..183 CDD:409353 2/4 (50%)
Ig strand C' 185..187 CDD:409353 0/1 (0%)
Ig strand D 195..199 CDD:409353 0/3 (0%)
Ig strand E 203..209 CDD:409353 2/10 (20%)
Ig strand F 216..223 CDD:409353 4/6 (67%)
Ig strand G 230..238 CDD:409353 3/7 (43%)
Ig 242..333 CDD:416386 23/93 (25%)
Ig strand A' 250..253 CDD:409353 0/2 (0%)
Ig strand B 259..266 CDD:409353 1/6 (17%)
Ig strand C 272..277 CDD:409353 3/4 (75%)
Ig strand C' 281..283 CDD:409353 0/1 (0%)
Ig strand D 289..293 CDD:409353 0/3 (0%)
Ig strand E 295..305 CDD:409353 2/9 (22%)
Ig strand F 314..322 CDD:409353 1/7 (14%)
Ig strand G 325..334 CDD:409353 4/8 (50%)
Dscaml1NP_001101611.1 IG 101..173 CDD:214652
IGc2 101..168 CDD:197706
Ig 183..276 CDD:299845
IG_like 195..276 CDD:214653
I-set 291..369 CDD:254352
IGc2 298..359 CDD:197706
IGc2 386..447 CDD:197706
I-set 466..560 CDD:254352
Ig 466..556 CDD:299845
IGc2 577..635 CDD:197706 18/68 (26%)
IG_like 665..744 CDD:214653 5/78 (6%)
Ig 673..739 CDD:143165 5/65 (8%)
I-set 748..843 CDD:254352 23/94 (24%)
Ig7_DSCAM 765..843 CDD:143211 23/77 (30%)
I-set 849..942 CDD:254352 22/93 (24%)
Ig 861..949 CDD:299845 19/87 (22%)
FN3 945..1039 CDD:238020 16/95 (17%)
FN3 1046..1143 CDD:238020 18/91 (20%)
fn3 1151..1237 CDD:278470
FN3 1249..1340 CDD:238020
IGc2 1364..1428 CDD:197706
FN3 1442..1532 CDD:238020
FN3 1546..1618 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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