DRSC/TRiP Functional Genomics Resources

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Protein Alignment DIP-delta and chl1b

DIOPT Version :9

Sequence 1:NP_001097508.2 Gene:DIP-delta / 5740816 FlyBaseID:FBgn0085420 Length:469 Species:Drosophila melanogaster
Sequence 2:XP_017212175.2 Gene:chl1b / 100318566 ZFINID:ZDB-GENE-091105-1 Length:1294 Species:Danio rerio


Alignment Length:285 Identity:70/285 - (24%)
Similarity:109/285 - (38%) Gaps:42/285 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    58 GRDANLPCVVEHLGGYKVAWIHIDRQMILTIHRHVISRIPRYSITYTDNTWLLHVNQAHQDDRGY 122
            |.|..|.|:.|.....||.|:.|.           .:::|. .:....:..||.|...:::|.|.
Zfish   276 GEDLQLECIAEGFPTPKVEWVKIG-----------FNKLPE-RVVVESHGKLLTVEMVNEEDEGK 328

  Fly   123 YMCQVNTNPMISQVGYLQVVV--PPNILDIESTPSSVAVRENQNINMTCRADGFPAPKIIWRRED 185
            |||:.. ||....|.:..|.|  ||   :.|..|.|..|....::.:.|...|.|.|.:.| |.:
Zfish   329 YMCRAK-NPHGEVVHHFHVTVEEPP---EFEIEPQSQLVTIGADVLIKCVVKGNPQPTVGW-RVN 388

  Fly   186 G---EEIAVEKKKKVLVYDADVLPLTKVSRNEMGAYLCIATNGVPPSVSKRIILDVEFSPMIWVP 247
            |   .|:....:|   :.....:.:...:......|.|.|||.....::...|:.:...|:|...
Zfish   389 GRPLNEVPTSNRK---ILKDGTISIHNANPENSAVYQCEATNKHGTILANANIMIMNIQPLILTE 450

  Fly   248 NQL-VGAPSGTDVTIDCHTEAHPKAIIYWVYNSVMVLPSKKYKTDYTENS-YRAHM--KLTIRNL 308
            |.| ..|..|..|.:.|...:.|.:.|.|         ||....:..|.. :..|.  .|.|.|:
Zfish   451 NNLQYMAVEGKSVVMHCKVFSSPASSITW---------SKADSANAVEGERFTVHQNGSLEIHNV 506

  Fly   309 QYGDFGNYRCISKNSLGETEGSIRV 333
            ...|.|.|.|.::|    |||.:.:
Zfish   507 MKEDMGEYSCFAQN----TEGKVAI 527

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-deltaNP_001097508.2 IG 51..143 CDD:214652 22/84 (26%)
Ig 145..238 CDD:416386 20/95 (21%)
Ig strand A 145..149 CDD:409353 1/3 (33%)
Ig strand A' 154..159 CDD:409353 2/4 (50%)
Ig strand B 165..172 CDD:409353 1/6 (17%)
Ig strand C 178..183 CDD:409353 1/4 (25%)
Ig strand C' 185..187 CDD:409353 1/4 (25%)
Ig strand D 195..199 CDD:409353 1/3 (33%)
Ig strand E 203..209 CDD:409353 0/5 (0%)
Ig strand F 216..223 CDD:409353 2/6 (33%)
Ig strand G 230..238 CDD:409353 1/7 (14%)
Ig 242..333 CDD:416386 26/94 (28%)
Ig strand A' 250..253 CDD:409353 1/3 (33%)
Ig strand B 259..266 CDD:409353 2/6 (33%)
Ig strand C 272..277 CDD:409353 2/4 (50%)
Ig strand C' 281..283 CDD:409353 0/1 (0%)
Ig strand D 289..293 CDD:409353 0/3 (0%)
Ig strand E 295..305 CDD:409353 2/12 (17%)
Ig strand F 314..322 CDD:409353 3/7 (43%)
Ig strand G 325..334 CDD:409353 3/9 (33%)
chl1bXP_017212175.2 Ig 61..135 CDD:325142
Ig 138..231 CDD:325142
Ig 279..348 CDD:325142 20/81 (25%)
Ig 366..438 CDD:325142 14/75 (19%)
IG 454..533 CDD:214652 22/87 (25%)
I-set 538..628 CDD:333254
FN3 632..722 CDD:238020
FN3 734..815 CDD:238020
FN3 832..931 CDD:238020
fn3 942..1022 CDD:306538
FN3 1070..1142 CDD:214495
Bravo_FIGEY 1196..1279 CDD:316405
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12231
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.100

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