DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG34214 and Rbm28

DIOPT Version :9

Sequence 1:NP_001097444.1 Gene:CG34214 / 5740774 FlyBaseID:FBgn0085243 Length:148 Species:Drosophila melanogaster
Sequence 2:NP_598686.2 Gene:Rbm28 / 68272 MGIID:2655711 Length:750 Species:Mus musculus


Alignment Length:93 Identity:22/93 - (23%)
Similarity:36/93 - (38%) Gaps:20/93 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    57 KLPPDANIRYAEWRIITGDMELF-QVQGVRFDKIMLVLGEENISWVFYQNTPLFRRIEGSACFPV 120
            :|||.|.....|        ||| ||..|:...::...|.:......|....:...::.:.....
Mouse    10 RLPPSARSDQLE--------ELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEIT 66

  Fly   121 SYCGCCLNNQYLDIMAKIKQTVSRKKIR 148
            ::.||           ||..||::||:|
Mouse    67 TFEGC-----------KIDVTVAKKKLR 83

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34214NP_001097444.1 None
Rbm28NP_598686.2 RRM1_RBM28_like 5..81 CDD:240859 19/89 (21%)
ELAV_HUD_SF 6..404 CDD:273741 22/93 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 84..110 22/93 (24%)
RRM2_RBM28_like 115..190 CDD:240860
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 195..320
RRM3_RBM28_like 325..407 CDD:240861
RRM4_RBM28_like 477..571 CDD:240862
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 587..716
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0127
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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