DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hsc20 and Hscb

DIOPT Version :9

Sequence 1:NP_001097616.1 Gene:Hsc20 / 5740624 FlyBaseID:FBgn0263606 Length:240 Species:Drosophila melanogaster
Sequence 2:XP_008767562.1 Gene:Hscb / 360826 RGDID:1311005 Length:246 Species:Rattus norvegicus


Alignment Length:165 Identity:57/165 - (34%)
Similarity:93/165 - (56%) Gaps:13/165 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 SVESSPACWNCQKK--SELKQNMICSDCGHLQDVNSGINYFKLLSFPIQFSLESQKLTRSFRQLQ 101
            |:|  |.||||.:.  :.......|:.|..||..:...:||.|::....|.::.:||.:.::|||
  Rat    35 SIE--PQCWNCGRAMGAGRGDEFFCAHCRALQPPDPTRDYFSLMNCNQSFRVDIRKLQQRYQQLQ 97

  Fly   102 TIVHPDKYSNKTSREQTNSSDWSSLINKAYKTLSTPIDRGQYLLQLEGEQMPQDNS-ALNKEFLM 165
            .:||||.:|.|:..|:..|...|:|:|.|||||..|:.||.|||:|:|.::|:... ..:.:||:
  Rat    98 RLVHPDFFSQKSQTEKRFSEKHSTLVNDAYKTLQAPVSRGLYLLKLQGIEIPEGTDYRTDSQFLV 162

  Fly   166 AMMERNEEVEDAEDTQTLENLNIQLIKELEEMARK 200
            .:||.||::.||:....:|        |:|...|:
  Rat   163 EIMEINEKLADAKSEAAME--------EVEATVRE 189

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hsc20NP_001097616.1 hscB 75..239 CDD:235133 46/127 (36%)
DnaJ 75..135 CDD:99751 24/59 (41%)
HSCB_C 159..231 CDD:285042 12/42 (29%)
HscbXP_008767562.1 PknG_rubred <40..60 CDD:293524 5/19 (26%)
hscB 67..>189 CDD:235133 45/129 (35%)
HSCB_C 157..>189 CDD:285042 11/39 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166341924
Domainoid 1 1.000 64 1.000 Domainoid score I9922
eggNOG 1 0.900 - - E1_COG1076
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H13945
Inparanoid 1 1.050 125 1.000 Inparanoid score I4616
OMA 1 1.010 - - QHG54294
OrthoDB 1 1.010 - - D1129824at2759
OrthoFinder 1 1.000 - - FOG0004407
OrthoInspector 1 1.000 - - oto95807
orthoMCL 1 0.900 - - OOG6_102596
Panther 1 1.100 - - LDO PTHR14021
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X4795
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1514.770

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