DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG34353 and lsamp

DIOPT Version :9

Sequence 1:NP_001287571.1 Gene:CG34353 / 5740590 FlyBaseID:FBgn0085382 Length:581 Species:Drosophila melanogaster
Sequence 2:NP_001034921.1 Gene:lsamp / 664692 ZFINID:ZDB-GENE-090108-1 Length:333 Species:Danio rerio


Alignment Length:307 Identity:95/307 - (30%)
Similarity:140/307 - (45%) Gaps:34/307 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    59 HILFLAIAVVSLHFES---VSAQSMMTKNEPMFISRSETFKFITGETIVLPCEVANTDTYV--VA 118
            |.:|:....:...||.   :|.:|..:         ::......|:|.|:.|.|   |..|  ||
Zfish     7 HSVFIPGFFLLFGFEGFPVISVESQRS---------TDNITIRQGDTTVIRCYV---DDKVSKVA 59

  Fly   119 WKRGIAILTAGSVKVTPDPRVRLVN----GFNLQIRDALPTDAGDYICQIATMDPREITHTVEIL 179
            |.....|:.||..|.:.||||.||.    .::|:|:.....|.|.|.|.|.|....:.:....|:
Zfish    60 WLNRSNIIFAGEDKWSLDPRVELVTQGQLEYSLRIQKVDVFDEGPYTCSIQTKQQSKTSQVYLIV 124

  Fly   180 -VPPRIHHISTGGHLQVKKGSSVRIECSATGNPMPNVTWSRKNNILPNGEEKLHSHVLSIENVDR 243
             ||..|:.:|.  .:.|.:||:|.:.|.|.|.|.|.:||...|   |:.|.......|.|..|.|
Zfish   125 QVPAIIYKVSE--DITVNEGSNVALTCLANGRPDPAITWRLLN---PSAEALDVGEYLEISGVVR 184

  Fly   244 HKGGVYICTANNRVGQPASSQVVLHVLFSPEISVERPVVFSGE---GHEATLVCIVHGETQPEVI 305
            .:.|.|.|.|:|.|..|....|.:.|.:.|.|...|    |.|   |....|.|......|||..
Zfish   185 SQAGRYECKASNDVSTPDVKYVNVVVNYPPYIKDVR----SSETAVGQAGVLHCEASAVPQPEFE 245

  Fly   306 WFKDTMQLDTTERHIMETRGSRHTLIIRKVHPQDFGNYSCVAENQLG 352
            |::|..:|.:::...::..|||..|::..|..:|:|||:|||.|:||
Zfish   246 WYRDERRLSSSQSLTIQVSGSRTVLVVANVTEEDYGNYTCVATNRLG 292

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34353NP_001287571.1 IG_like 100..180 CDD:214653 29/86 (34%)
Ig 103..177 CDD:143165 26/79 (33%)
IG_like 191..269 CDD:214653 26/77 (34%)
IGc2 198..258 CDD:197706 22/59 (37%)
I-set 273..360 CDD:254352 29/83 (35%)
Ig 290..359 CDD:143165 23/63 (37%)
FN3 <466..524 CDD:238020
lsampNP_001034921.1 Ig 34..124 CDD:299845 28/92 (30%)
IG_like 36..124 CDD:214653 28/90 (31%)
IG_like 134..197 CDD:214653 23/67 (34%)
IGc2 141..199 CDD:197706 22/60 (37%)
I-set 213..300 CDD:254352 29/84 (35%)
Ig 231..298 CDD:143165 23/62 (37%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H20533
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.000

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