DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG34353 and ncam3

DIOPT Version :9

Sequence 1:NP_001287571.1 Gene:CG34353 / 5740590 FlyBaseID:FBgn0085382 Length:581 Species:Drosophila melanogaster
Sequence 2:XP_017207042.1 Gene:ncam3 / 566122 ZFINID:ZDB-GENE-131127-340 Length:688 Species:Danio rerio


Alignment Length:580 Identity:131/580 - (22%)
Similarity:211/580 - (36%) Gaps:200/580 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 RSSSSSSRIAYKFECHSNSKQNSKTGKMAAEARTISKPGHIRDRRVGSLPHILFLAIAVVSLHFE 73
            ::..|||.:..|      :.|.|.||:...|                                ||
Zfish    64 KNDESSSTLNLK------NVQLSDTGRYTCE--------------------------------FE 90

  Fly    74 SVSAQSMMTKNEPMFISRSETF-------KFITGETIVLPCEVANTDTYVVAWKRGIAIL---TA 128
            . |..:..|.|..:::.::..|       :|:..:|.::||.|.......:.|.|...::   ..
Zfish    91 D-SNGNKKTTNSQIYVYKTPDFGQTRTFHEFLVNQTAIIPCMVTGKPEVEIHWFRNDRMIHDDGR 154

  Fly   129 GSVKVTPDPRVRLVNGFNLQIRDALPTDAGDYICQIATMDPREITHTVEILV----PPR--IHHI 187
            ..:|:.|| |..::.|...:       |.|.|||: ..:..|.||..:.|.|    ||.  ||  
Zfish   155 SHLKILPD-RTLMIVGIQHE-------DRGTYICE-GKIKGRPITRNLPISVVVNEPPTVLIH-- 208

  Fly   188 STGGHLQVKK------GSSVRIECSATGNPMPNVTWSRKNNILPNGEEKLHSH-----VLSIENV 241
                  :.||      .:|:.|.|...|.|:|.:||:..::.    .:..:|:     .|:|..|
Zfish   209 ------EEKKSVFAGPNTSLSIACLVKGAPVPTITWTTPSSF----NDYRYSYNTDKSELTISAV 263

  Fly   242 DRHKGGVYICTANNRVGQPASSQVVLHVLFSPEISVERPVVFSGE------GHEATLVCIVHGET 300
            .|...|.|||||:|::|:.::       :|..::|....|||:..      |..|::.|...|..
Zfish   264 TRSDYGEYICTASNKIGESSA-------IFVLDVSELPTVVFTENKLSIIPGESASVFCNATGHP 321

  Fly   301 QPEVIWF-KDTMQLDTTERHIMETRGSRHTLIIRKVHPQDFGNYSCVAENQLGKARKTLQLSGKP 364
            .|.|.|. |||.|..:.|..          ||:..:.|.|.|.|||:|.|.:|......||    
Zfish   322 APAVQWVRKDTQQKMSGEPE----------LILENIMPSDGGFYSCIATNIVGTTTGDFQL---- 372

  Fly   365 NVAVFNSPPISQYKDRYNISWAVDSHSPIEEYKLSFRKLPQGHEVVGNAIDSSSSSSSMSSSSSQ 429
                              |:|                  |:           :.|..|||:.|| 
Zfish   373 ------------------ITW------------------PE-----------TPSQFSMSAGSS- 389

  Fly   430 MYGSGLHAHRIGSNMGGLSGLSGSGSYSGYGNVIHW---GHNDW-RNVVLPAVPVSHHYAQGMSY 490
               |.:..|.:....||       ...|.|  ::.|   ..::| :|:|.||.|:          
Zfish   390 ---SAILIHSVSVQDGG-------SPISYY--ILQWKKPSEDNWNQNIVKPAYPL---------- 432

  Fly   491 MVRGLDPDQHYEATVQSRNRYGWSDLTNSFVFSTSSNDGPVDLSTFLNHGLSDNEMRDLS 550
            |::.|:|...|...:.::|.:...:      |||..|     :.|...||..|:.:..||
Zfish   433 MIKDLEPYTEYSVRIAAKNSHYQGN------FSTEQN-----IFTQSRHGEPDSPVLSLS 481

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34353NP_001287571.1 IG_like 100..180 CDD:214653 20/82 (24%)
Ig 103..177 CDD:143165 18/76 (24%)
IG_like 191..269 CDD:214653 23/88 (26%)
IGc2 198..258 CDD:197706 20/64 (31%)
I-set 273..360 CDD:254352 27/93 (29%)
Ig 290..359 CDD:143165 22/69 (32%)
FN3 <466..524 CDD:238020 12/58 (21%)
ncam3XP_017207042.1 I-set 18..99 CDD:254352 12/73 (16%)
IGc2 31..94 CDD:197706 12/68 (18%)
IG_like 122..197 CDD:214653 20/83 (24%)
IGc2 123..182 CDD:197706 16/67 (24%)
Ig 202..290 CDD:299845 28/106 (26%)
I-set 212..290 CDD:254352 23/88 (26%)
IGc2 307..364 CDD:197706 22/66 (33%)
FN3 376..466 CDD:238020 29/134 (22%)
fn3 <499..558 CDD:278470
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR45080
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.100

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