DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG34353 and paplna

DIOPT Version :9

Sequence 1:NP_001287571.1 Gene:CG34353 / 5740590 FlyBaseID:FBgn0085382 Length:581 Species:Drosophila melanogaster
Sequence 2:XP_005169942.1 Gene:paplna / 562930 ZFINID:ZDB-GENE-070815-4 Length:1187 Species:Danio rerio


Alignment Length:465 Identity:101/465 - (21%)
Similarity:173/465 - (37%) Gaps:105/465 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 SRIAYKFECHSNSKQNSKTGKMAAEARTISKPGHIRDRRVGSLPHILFLAIAVVSLHFESVSAQS 79
            |.:..:.:.|..|.|:.:. :..|..:..|...|...|......:.:..:....|...|.||   
Zfish   773 SELRQRDQAHVLSLQHGRR-RFPAHVQLSSSGAHRAQRAHQPASNAMQQSNPAASWTAEGVS--- 833

  Fly    80 MMTKNEPMFISRSETFKFITGETIVLPCEVA--NTDTYVVAWKRGIAILTAGSVKVTPDPRVRLV 142
             :.|.:|      .|.:.:.|:.:||||.|.  .:...:|.|:|       ..|.|.|....:.:
Zfish   834 -IDKTDP------STVEGLVGQRVVLPCRVTPPPSSAVLVEWRR-------DGVPVDPTRHEQQL 884

  Fly   143 NGFNLQIRDALPTDAGDYICQIATMDPREITHTVEILVPPRIHHISTGGH--------------- 192
            :| :|.:......|:|.::| :||.|.:. .|        |..::|..|.               
Zfish   885 DG-SLLVGPITLQDSGWFLC-VATRDDKR-DH--------RYIYLSVSGSSQNNAGISEVDSSQS 938

  Fly   193 ----------------LQVKKGSSVRIECSATGNPMP-------NVTWSRKNNILPNGEEKLHSH 234
                            ::.:.|.:.:::||.    :|       .:.|||....|.:.....||.
Zfish   939 YTSQSSSRFNIDYSPLVEARAGQTAKLQCSV----LPVSAIHAVTIHWSRAGQPLNSLRHSQHSD 999

  Fly   235 -VLSIENVDRHKGGVYICTANNRVGQPASSQVVLHVLFSPEIS---VERPVVFSGEGHEATLVCI 295
             .|.|:.:.....|:|.||..: ..:....||.|.||....|:   ::..||   :|..|.|.|:
Zfish  1000 GTLVIKQLTADDSGLYTCTVTD-AQKFEERQVQLRVLGDLRITKAPIDVDVV---QGSTAQLACV 1060

  Fly   296 VHGETQPEVIWFKDTMQL--DTTERHIMETRGSRHTLIIRKVHPQDFGNYSCVAENQLGKARKTL 358
            |.|| ...|.|.::.:.:  |....|:    .:..|||:..|...|.|.|:|.|..      .||
Zfish  1061 VTGE-NVNVGWSRNGVPVRPDGHRVHV----SADGTLILNNVQSVDEGTYTCNAYT------GTL 1114

  Fly   359 QLSGKPNVAVFNSPPISQYKDRYNISWAVDSHSPIEEYKLSFRKLPQGHEVVGNAIDSSSSSSSM 423
            .:|....:.:..:|.......:::.|..||      :.:|:..||     :|...:.||...||.
Zfish  1115 SVSAAAEIRLAKTPQQDIDGGQFSSSDCVD------QPELANCKL-----IVYARLCSSPYYSSF 1168

  Fly   424 SSSSSQMYGS 433
            ..||...|.:
Zfish  1169 CCSSCARYAT 1178

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34353NP_001287571.1 IG_like 100..180 CDD:214653 21/81 (26%)
Ig 103..177 CDD:143165 20/75 (27%)
IG_like 191..269 CDD:214653 20/116 (17%)
IGc2 198..258 CDD:197706 16/67 (24%)
I-set 273..360 CDD:254352 25/91 (27%)
Ig 290..359 CDD:143165 20/70 (29%)
FN3 <466..524 CDD:238020
paplnaXP_005169942.1 TSP1 24..75 CDD:214559
ADAM_spacer1 181..293 CDD:310520
TSP1 303..356 CDD:214559
TSP1 388..442 CDD:214559
TSP1 449..498 CDD:214559
TSP1 504..557 CDD:214559
KU 720..771 CDD:238057
Ig_3 839..906 CDD:316449 19/81 (23%)
IGc2 960..1022 CDD:197706 16/66 (24%)
I-set 1039..1121 CDD:333254 26/95 (27%)
PLAC 1142..1173 CDD:312271 11/41 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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