DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG34353 and dscamb

DIOPT Version :9

Sequence 1:NP_001287571.1 Gene:CG34353 / 5740590 FlyBaseID:FBgn0085382 Length:581 Species:Drosophila melanogaster
Sequence 2:XP_009289749.1 Gene:dscamb / 386937 ZFINID:ZDB-GENE-031118-67 Length:2020 Species:Danio rerio


Alignment Length:590 Identity:133/590 - (22%)
Similarity:218/590 - (36%) Gaps:142/590 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    81 MTKNEPMFISRSETFKFITGETIVLPCEVANTDTYV-VAWKRGIAILTAGSVKVTPDPRVRLVNG 144
            :|...|..|..|::.....|:.:.:||.|.:.|..: :.|.:....:.| |:.||.| .:...: 
Zfish   590 VTVKVPPLIQHSDSQSASIGQRVFIPCVVISGDLPMSITWHKDGRPINA-SLGVTID-NIDFTS- 651

  Fly   145 FNLQIRDALPTDAGDYICQIATMDPREITHTVEIL--VPPRIHHISTGGHLQVKK-------GSS 200
             :|:|.:......|.|.| ||..:...:.|:::::  |||         |.:|:.       |.|
Zfish   652 -SLRISNLSEIHNGSYTC-IARNEAAAVEHSIQLIVKVPP---------HFEVQPKDQDGIYGKS 705

  Fly   201 VRIECSATGNPMPNVTWSRKN------------------NILPNGEEKLHSHVLSIENVDRHKGG 247
            |.:.|||.|||:|.:.|:...                  .:|.||.       |.|::|.....|
Zfish   706 VTLNCSAKGNPIPTIVWNHSKGAGVPQFQPIALNSGSRVQLLENGS-------LLIKHVLEEDAG 763

  Fly   248 VYICTANNRVGQPASSQVVLHVLFSPEISVERPVVFSGEGHEATLVCIVHGETQPEVIWFKDTMQ 312
            .|:|..:|.||...|..:.|.|.....|:.......:.:||...:.|..|||...:|.|.|    
Zfish   764 FYLCKVSNDVGADISKSMYLTVKIPAMITSYPNTTRAEQGHMTEMSCTAHGEKPIKVRWEK---- 824

  Fly   313 LDTTERHIMETRGSRHTLIIRKV-----------HP--QDFGNYSCVAENQLGKARKTLQL--SG 362
                |.||:....||:.:.:::|           |.  :|.|.:||:|.|..|:.:..:||  ..
Zfish   825 ----ESHIINPDMSRYVVTVKEVGDEVISTLQILHTVREDSGFFSCIAINSYGEDKGIIQLIVQD 885

  Fly   363 KPNVAVFNSPP---ISQYKDR-YNISWAV--DSHSPIEEYKLSFRKLPQGHEVVGNAIDSSSSSS 421
            :|:      ||   |.:.||| ..:.|.:  |.:|||..|.::::          |...|.:||.
Zfish   886 RPD------PPEVEIREVKDRTIALRWTMGFDGNSPITGYDINYK----------NKSASWASSQ 934

  Fly   422 SMSSSSSQMY---------GSGLHAHRIGSNMGGLSGLSGS-------------------GSYSG 458
            .....|.|:.         .|..:......|..|.|..|..                   .:.|.
Zfish   935 MTKDVSPQLNQATIIELHPASTYNIRMFAKNQIGESRPSNELTITTDEAPPDGAPQDVQLEAISS 999

  Fly   459 YGNVIHW--GHNDWRNVVLPAVPVSH-HYAQGMSYMVRGLDPD----------------QHYEAT 504
            .|..:.|  .|...:|.::.:..|.: .:..|.|.....::.|                ..||..
Zfish  1000 QGIKVTWKPPHKHLQNGLIRSYQVCYREFGTGGSPQYNTINVDTTGDIETLTLDNLKKYTQYEVR 1064

  Fly   505 VQSRNRYGWSDLTNSFVFSTSSNDGPVDLSTFLNHGLSDNEMRDLSVTFYGSSAINRQKLGLLAL 569
            ||:.||.|... |:..:..|:..|.|......:....:..|...||.:.....|:|...||...:
Zfish  1065 VQAANRAGMGP-TSEEITITTLEDVPSRPPENVVTTATTPETISLSWSALPKEALNGMLLGYRVI 1128

  Fly   570 SSATL 574
            ..|.|
Zfish  1129 FWANL 1133

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34353NP_001287571.1 IG_like 100..180 CDD:214653 19/82 (23%)
Ig 103..177 CDD:143165 18/74 (24%)
IG_like 191..269 CDD:214653 27/102 (26%)
IGc2 198..258 CDD:197706 21/77 (27%)
I-set 273..360 CDD:254352 24/99 (24%)
Ig 290..359 CDD:143165 21/81 (26%)
FN3 <466..524 CDD:238020 14/74 (19%)
dscambXP_009289749.1 I-set 132..198 CDD:254352
I-set 225..310 CDD:254352
IGc2 239..300 CDD:197706
IG_like 320..400 CDD:214653
IGc2 328..391 CDD:197706
IG_like 417..501 CDD:214653
Ig 424..498 CDD:143165
IG_like 511..592 CDD:214653 0/1 (0%)
IGc2 518..576 CDD:197706
I-set 595..685 CDD:254352 22/94 (23%)
Ig 612..682 CDD:143165 18/74 (24%)
I-set 689..785 CDD:254352 28/111 (25%)
Ig7_DSCAM 706..785 CDD:143211 23/85 (27%)
IG_like 795..883 CDD:214653 25/95 (26%)
Ig 803..890 CDD:299845 26/100 (26%)
FN3 887..980 CDD:238020 24/108 (22%)
FN3 987..1084 CDD:238020 17/97 (18%)
FN3 1092..1185 CDD:238020 9/42 (21%)
FN3 1190..1279 CDD:238020
IGc2 1302..1367 CDD:197706
FN3 1398..1471 CDD:238020
FN3 1485..1557 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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