DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG34353 and itgb4

DIOPT Version :9

Sequence 1:NP_001287571.1 Gene:CG34353 / 5740590 FlyBaseID:FBgn0085382 Length:581 Species:Drosophila melanogaster
Sequence 2:XP_005166847.1 Gene:itgb4 / 335269 ZFINID:ZDB-GENE-030131-7209 Length:1931 Species:Danio rerio


Alignment Length:638 Identity:126/638 - (19%)
Similarity:205/638 - (32%) Gaps:220/638 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 SNSKQNSKTGKMAAEARTIS-KPGHIRDRRVGSLPHILFLAIAVVSLHFESVSAQSMMTKNEPMF 88
            :|.:|::|.|:......||: ||                          ||    |:|.     |
Zfish  1085 TNPRQSAKLGRYPRTVITIADKP--------------------------ES----SVMA-----F 1114

  Fly    89 ISRSETFKFITGETIVLPCE-VANTDT-YVVAWKRGIA--ILTAGSVKVTP---------DPRVR 140
            ...::||. .|.....:|.| ..|.:| ..|.|:...|  ...:..:|..|         :||..
Zfish  1115 KKSTQTFS-TTDSLYTIPVERTGNRETPATVHWRTNKASRFDISSPLKFAPGEAEKNILINPRTH 1178

  Fly   141 ----LVNGFNLQIRD--------------ALPTDA-GD----------YICQIATMDPREITHTV 176
                :...|||::.|              .:.||. ||          |:.|.||          
Zfish  1179 PSPIIPEKFNLELLDPSNNAIIGKRKTTEVIVTDGRGDGKNQDFQKMEYVTQTAT---------- 1233

  Fly   177 EILVPPRIHHISTGGHLQVKKGSSVRIECSATGNPMPNVTWSRKNN---------ILPNGEEK-- 230
                       |.||.|.    |...|:..|||.....:.|....|         |..:.|:|  
Zfish  1234 -----------SPGGRLY----SPANIKAVATGPKNIRLNWKPSQNANGYKVKYWIYGDPEDKAK 1283

  Fly   231 ---LHSHVLSIENVDRHKGGVYICTANNRV------------------------GQPASSQVVLH 268
               :.:....:.|:|.:      |....||                        |:|  .::..:
Zfish  1284 FMDVKTPQAELTNLDPY------CDYEMRVCGYNALGDGNYSDIIQCQTLEDIPGEP--GRLAFN 1340

  Fly   269 VLFSP---EISVERPVVFSGEGHEATLVCIVHGETQPEVIWFKDTMQLDTT--ERHIMETRGSRH 328
            |: ||   ::|...|...:|         |:.|.   |||:.........|  .:.:|.....:.
Zfish  1341 VI-SPTVTQVSWAEPAEANG---------IITGY---EVIYMPINEDKKPTGPPKKVMIDNPKKR 1392

  Fly   329 TLIIRKVHPQDFGNYSCVAENQLG---KARKTLQLSGKP----NVAVFNSPPI--SQYKDRYNIS 384
            .|:|..:.|.....|...|.|::|   ....|:.|:.:|    ::.:....||  ::..:.|: |
Zfish  1393 MLLIENLQPSQTYCYKVRASNKVGWGPYREATINLASQPTRPMSIPIIPDIPIVDAEAGEEYD-S 1456

  Fly   385 WAVDSH----SPIEEYKLSFRKLPQGHEVVG----NAIDSSSSSSSMS---SSSSQMYGSGLHAH 438
            :.:.|:    ||....:.|...|.....|.|    |.:.......|:|   ||||..|.......
Zfish  1457 YLMYSNEVLRSPTSSLRPSVTDLSDDQFVNGKWEQNFLFPGGGGGSLSRNISSSSTTYSHSTPRT 1521

  Fly   439 RIGSNMGGLSGLSGSGSYSGYGNVIHWGHNDWRNVVLPAVPVSHHYAQG--------MSYMVRGL 495
            .:.:|....:.:||.|..:.:...:..|.....:|:|.....:.||.:|        |..:..||
Zfish  1522 NVTNNSSTTTYISGKGGSTTHRYDVRDGGLLKEDVILRKRSENRHYTEGDGVRDSIVMGNLSGGL 1586

  Fly   496 DPDQHYEATVQSRNRYGWSDL--TNSFVFSTSS---------NDGPVDLSTFL 537
                        .:..|.|..  |.|..:|.||         ||..::|.:.|
Zfish  1587 ------------LDNLGVSSFSQTTSTSYSLSSRARTQSEDINDALLNLDSVL 1627

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34353NP_001287571.1 IG_like 100..180 CDD:214653 23/121 (19%)
Ig 103..177 CDD:143165 23/115 (20%)
IG_like 191..269 CDD:214653 19/115 (17%)
IGc2 198..258 CDD:197706 15/97 (15%)
I-set 273..360 CDD:254352 19/94 (20%)
Ig 290..359 CDD:143165 15/73 (21%)
FN3 <466..524 CDD:238020 13/67 (19%)
itgb4XP_005166847.1 Integrin_beta 37..457 CDD:278776
EGF_2 <468..490 CDD:285248
EGF_2 545..573 CDD:285248
Integrin_B_tail 625..709 CDD:285239
Calx-beta 991..1064 CDD:295344
FN3 1242..1326 CDD:238020 14/89 (16%)
FN3 1331..1420 CDD:238020 22/103 (21%)
fn3 1640..1720 CDD:278470
fn3 1751..1835 CDD:278470
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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