DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG34353 and ncam1a

DIOPT Version :9

Sequence 1:NP_001287571.1 Gene:CG34353 / 5740590 FlyBaseID:FBgn0085382 Length:581 Species:Drosophila melanogaster
Sequence 2:XP_009293555.1 Gene:ncam1a / 30447 ZFINID:ZDB-GENE-990415-31 Length:1010 Species:Danio rerio


Alignment Length:593 Identity:139/593 - (23%)
Similarity:215/593 - (36%) Gaps:181/593 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   101 ETIVLPCEVANTDTYVVAWKRGIAILTAGSVKVTPDPRVRL-VNGFNLQIRDALPTDAGDYICQI 164
            :.:.|.|.........|.|.|       |:.::..|.:..| .:|..|.|:|....|.|||.| |
Zfish   226 QAVTLACHADGYPEPTVKWAR-------GNTELESDEKYSLNEDGSELTIKDVNKLDEGDYKC-I 282

  Fly   165 ATMDPREITH--TVEILVPPRIHHI--STGGHLQVKKGSSVRIECSATGNPMPNVTWSRKNNIL- 224
            |.....|.:.  |:.:.|.|:|..:  .|...|:    ..:.:.|.|||:|.||:.||....:. 
Zfish   283 ARNKAGERSEEVTLNVFVQPKITFLENQTASELE----EQITLTCEATGDPTPNIIWSFGRRVFT 343

  Fly   225 ---------PNGEEKLHSHV----------LSIENVDRHKGGVYICTANNRVGQPASSQVVLHVL 270
                     |...:.|..:|          |:::.|.....|.|:|||.|.:||...| :.|.|.
Zfish   344 ENEQASWTRPEKHKSLDGNVVVRSDARVSSLTLKYVQFTDAGQYLCTARNSIGQDIQS-MYLEVR 407

  Fly   271 FSPEISVERPVVFSGEGHEATLVCIVHGETQPEVIWFKDTMQL---DTTERHIMETRGSRHTLII 332
            ::|:|...: .||:.||:.|.:.|.........|:||:|..||   :||...|..|    .|:..
Zfish   408 YAPKIQGPQ-AVFTWEGNPANITCEALAHPGASVLWFRDGQQLPSANTTNVKIYNT----PTVSF 467

  Fly   333 RKVHP---QDFGNYSCVAENQLGKARKTLQLSGKPNVAVFNSPPISQ---YKDRYNISWAVDSHS 391
            .:|.|   .|||:|:|.|.|.:|...|...|   ....|.::|.|.:   |.....|.:...:.|
Zfish   468 LEVTPDSQNDFGSYNCTATNVIGTESKEFIL---VQADVPSAPSIERVEPYSSTAMIEFEEPASS 529

  Fly   392 ---PIEEYKLSFR-----------KLPQG--------------HEVVGNAIDSSSSSSSMSSSS- 427
               |:.:||..:|           :|..|              :||..:||:......|.:..| 
Zfish   530 GGVPVLKYKAEWRIAGQDWTDREYELEDGLNLITIVGLKPETTYEVKISAINGKGEGESSAPESF 594

  Fly   428 --------------------------------------SQMYGSGLHAHRIGSNMGGLSGLSGSG 454
                                                  .|..|:.:..|.|..:.||        
Zfish   595 KTQPVRLPFRMSPETPTSIPPTTADIKGEPNPPKLEAKPQSTGNEMKVHFIKQDDGG-------- 651

  Fly   455 SYSGYGNVIHW-------GHNDWRNVVLPAVPVSHHYAQGMSYMVRGLDPDQHYEATVQSRNRYG 512
                 ..:.|:       ...||:..:  .:|.:..|     .::||||.:..||..|.:.|:.|
Zfish   652 -----SPIKHYLVRYRAKNRQDWKPEI--RMPDASDY-----IVLRGLDWNTEYEVYVIAENQRG 704

  Fly   513 WSDL-TNSF--------VFSTSSNDGP-----------------VDLST-FLNH-GLSDNEMRDL 549
            .|:. |.||        :..|||..|.                 ||::. |||. ||    :..:
Zfish   705 RSEPGTLSFRTLPEPTAIPETSSGLGTGAIVGILIVVFILLLFGVDVTCYFLNKCGL----LMCI 765

  Fly   550 SVTFYGSS 557
            :|.|.|.|
Zfish   766 AVNFCGKS 773

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34353NP_001287571.1 IG_like 100..180 CDD:214653 21/81 (26%)
Ig 103..177 CDD:143165 21/76 (28%)
IG_like 191..269 CDD:214653 25/97 (26%)
IGc2 198..258 CDD:197706 20/79 (25%)
I-set 273..360 CDD:254352 30/92 (33%)
Ig 290..359 CDD:143165 24/74 (32%)
FN3 <466..524 CDD:238020 17/66 (26%)
ncam1aXP_009293555.1 Ig 20..112 CDD:299845
I-set 21..111 CDD:254352
IG_like 121..200 CDD:214653
IGc2 128..189 CDD:197706
Ig 208..301 CDD:299845 21/82 (26%)
IG_like 219..298 CDD:214653 21/79 (27%)
Ig 300..406 CDD:299845 29/110 (26%)
IG_like 308..406 CDD:214653 26/102 (25%)
ig 413..498 CDD:278476 28/89 (31%)
IG_like 415..498 CDD:214653 28/87 (32%)
fn3 505..589 CDD:278470 15/83 (18%)
FN3 624..715 CDD:238020 24/110 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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