DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG34353 and Lsamp

DIOPT Version :9

Sequence 1:NP_001287571.1 Gene:CG34353 / 5740590 FlyBaseID:FBgn0085382 Length:581 Species:Drosophila melanogaster
Sequence 2:XP_038944182.1 Gene:Lsamp / 29561 RGDID:71102 Length:378 Species:Rattus norvegicus


Alignment Length:270 Identity:81/270 - (30%)
Similarity:134/270 - (49%) Gaps:19/270 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly   100 GETIVLPCEVANTDTYVVAWKRGIAILTAGSVKVTPDPRVRLVN----GFNLQIRDALPTDAGDY 160
            |:|.:|.|.|.:.:: .|||.....|:.||..|.:.||||.|..    .::|:|:.....|.|.|
  Rat    63 GDTAILRCVVEDKNS-KVAWLNRSGIIFAGHDKWSLDPRVELEKRHALEYSLRIQKVDVYDEGSY 126

  Fly   161 ICQIATM-DPREITHTVEILVPPRIHHISTGGHLQVKKGSSVRIECSATGNPMPNVTWSRKNNIL 224
            .|.:.|. :|:.....:.:.|||:|.:||:  .:.|.:||:|.:.|.|.|.|.|.:||   .::.
  Rat   127 TCSVQTQHEPKTSQVYLIVQVPPKISNISS--DVTVNEGSNVTLVCMANGRPEPVITW---RHLT 186

  Fly   225 PNGEE-KLHSHVLSIENVDRHKGGVYICTANNRVGQPASSQVVLHVLFSPEISVERPVVFSGE-- 286
            |.|.| :.....|.|..:.|.:.|.|.|.|.|.|......||.:.|.:.|.|:..:    |.|  
  Rat   187 PLGREFEGEEEYLEILGITREQSGKYECKAANEVSSADVKQVKVTVNYPPTITESK----SNEAT 247

  Fly   287 -GHEATLVCIVHGETQPEVIWFKDTMQLDTTERHIMETRGSRHTLIIRKVHPQDFGNYSCVAENQ 350
             |.:|:|.|.......|:..|::|..::::.....:::...:.:|.:..|..:.:|||:|||.|:
  Rat   248 TGRQASLKCEASAVPAPDFEWYRDDTRINSANGLEIKSTEGQSSLTVTNVTEEHYGNYTCVAANK 312

  Fly   351 LGKARKTLQL 360
            ||....:|.|
  Rat   313 LGVTNASLVL 322

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34353NP_001287571.1 IG_like 100..180 CDD:214653 25/84 (30%)
Ig 103..177 CDD:143165 23/78 (29%)
IG_like 191..269 CDD:214653 25/78 (32%)
IGc2 198..258 CDD:197706 21/60 (35%)
I-set 273..360 CDD:254352 23/89 (26%)
Ig 290..359 CDD:143165 17/68 (25%)
FN3 <466..524 CDD:238020
LsampXP_038944182.1 Ig 55..145 CDD:416386 25/82 (30%)
FR1 55..71 CDD:409353 3/7 (43%)
Ig strand A' 56..62 CDD:409353
Ig strand B 64..72 CDD:409353 3/7 (43%)
CDR1 72..76 CDD:409353 1/3 (33%)
FR2 77..84 CDD:409353 3/7 (43%)
Ig strand C 77..83 CDD:409353 3/6 (50%)
CDR2 85..95 CDD:409353 3/9 (33%)
Ig strand C' 87..90 CDD:409353 1/2 (50%)
Ig strand C' 92..95 CDD:409353 0/2 (0%)
FR3 96..131 CDD:409353 11/34 (32%)
Ig strand D 100..107 CDD:409353 3/6 (50%)
Ig strand E 110..116 CDD:409353 1/5 (20%)
Ig strand F 123..131 CDD:409353 3/7 (43%)
CDR3 132..136 CDD:409353 1/3 (33%)
Ig strand G 136..145 CDD:409353 1/8 (13%)
FR4 138..145 CDD:409353 0/6 (0%)
Ig_3 148..218 CDD:404760 26/74 (35%)
Ig strand A' 155..160 CDD:409353 1/6 (17%)
Ig strand B 166..173 CDD:409353 2/6 (33%)
Ig strand C 179..184 CDD:409353 2/7 (29%)
Ig strand D 190..193 CDD:409353 1/2 (50%)
Ig strand E 197..203 CDD:409353 2/5 (40%)
Ig strand F 210..217 CDD:409353 3/6 (50%)
Ig strand G 224..232 CDD:409353 2/7 (29%)
Ig_3 235..311 CDD:404760 19/79 (24%)
Ig strand B 252..256 CDD:409353 2/3 (67%)
Ig strand C 265..269 CDD:409353 0/3 (0%)
Ig strand E 290..294 CDD:409353 1/3 (33%)
Ig strand F 304..309 CDD:409353 3/4 (75%)
Ig strand G 318..321 CDD:409353 0/2 (0%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H20533
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X97
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.810

Return to query results.
Submit another query.