DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG34353 and Ncam1

DIOPT Version :9

Sequence 1:NP_001287571.1 Gene:CG34353 / 5740590 FlyBaseID:FBgn0085382 Length:581 Species:Drosophila melanogaster
Sequence 2:XP_038936733.1 Gene:Ncam1 / 24586 RGDID:67378 Length:1136 Species:Rattus norvegicus


Alignment Length:532 Identity:123/532 - (23%)
Similarity:202/532 - (37%) Gaps:114/532 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    78 QSMMTKNEPMFISRSETFKFITGETIVLPCEVANTDTYVVAWKRGIAILTAGSVKVTPDPRVRLV 142
            |.:|.||.|    ..:.||  .||..|:.|:|.::....:.||.     ....|.:..|.|..::
  Rat   116 QKLMFKNAP----TPQEFK--EGEDAVIVCDVVSSLPPTIIWKH-----KGRDVILKKDVRFIVL 169

  Fly   143 NGFNLQIRDALPTDAGDYICQIATMDPREITH---TVEILVPPRIHHISTGGHLQVKKGSSVRIE 204
            :...||||....||.|.|.|:...:...||..   .|.:.|||.:....:..:.....|.||.:.
  Rat   170 SNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLV 234

  Fly   205 CSATGNPMPNVTWSRKNNILPNGEEKLHSHV-------LSIENVDRHKGGVYICTANNRVGQPAS 262
            |.|.|.|.|.::|::....:.|.||....|:       |:|.|||::....|:|.|.|:.|:..:
  Rat   235 CDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDA 299

  Fly   263 SQVVLHVLFSPEIS-VERPVVFSGEGHEATLVCIVHGETQPEVIWFKDTMQLDTTER-------- 318
            | :.|.|...|:|: ||.......| .:.||.|...|:..|.:.|...|..:.:.|:        
  Rat   300 S-IHLKVFAKPKITYVENQTAMELE-EQVTLTCEASGDPIPSITWRTSTRNISSEEKASWTRPEK 362

  Fly   319 ------HIMETRGSR-HTLIIRKVHPQDFGNYSCVAENQLGKARKTLQLSGKPNVAVFNSP---- 372
                  |::....:| .:|.::.:...|.|.|.|.|.|.:|:..:::.|.      |..:|    
  Rat   363 QETLDGHMVVRSHARVSSLTLKSIQYTDAGEYICTASNTIGQDSQSMYLE------VQYAPKLQG 421

  Fly   373 PISQYKDRYN---------------ISWAVD-------SHSPIEEY---KLSFRKL-PQGHEVVG 411
            |::.|....|               |||..|       ::|.|:.|   ..|:.:: |......|
  Rat   422 PVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFG 486

  Fly   412 N-------------------AIDSSSSSS----SMSSSSSQMYGSGLHAHRIGSNMGGLSGLSGS 453
            |                   ..|:.||.|    ...||::|:......|      .||:..|...
  Rat   487 NYNCTAVNRIGQESLEFILVQADTPSSPSIDRVEPYSSTAQVQFDEPEA------TGGVPILKYK 545

  Fly   454 GSYSGYGNVIHWGHNDWRNVVLPAVPVSHHYAQGMSYMVRGLDPDQHYEATVQSRNRYGWSDLTN 518
            ..:...|... | |:.|.:       ......:|: ..:.||.|:..|...:.:.|..|..:::.
  Rat   546 AEWKSLGEEA-W-HSKWYD-------AKEANMEGI-VTIMGLKPETRYAVRLAALNGKGLGEISA 600

  Fly   519 SFVFSTSSNDGP 530
            :..|.|.....|
  Rat   601 ATEFKTQPVHSP 612

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34353NP_001287571.1 IG_like 100..180 CDD:214653 22/82 (27%)
Ig 103..177 CDD:143165 19/76 (25%)
IG_like 191..269 CDD:214653 25/84 (30%)
IGc2 198..258 CDD:197706 22/66 (33%)
I-set 273..360 CDD:254352 23/102 (23%)
Ig 290..359 CDD:143165 18/83 (22%)
FN3 <466..524 CDD:238020 10/57 (18%)
Ncam1XP_038936733.1 IgI_1_NCAM-1 20..116 CDD:409451 123/532 (23%)
Ig strand B 37..41 CDD:409451
Ig strand C 51..55 CDD:409451
Ig strand E 79..83 CDD:409451
Ig strand F 93..98 CDD:409451
Ig strand G 107..110 CDD:409451
IG_like 124..190 CDD:214653 21/76 (28%)
Ig strand B 135..139 CDD:409353 1/3 (33%)
Ig strand C 148..152 CDD:409353 0/3 (0%)
Ig strand E 172..176 CDD:409353 1/3 (33%)
Ig strand F 186..191 CDD:409353 2/4 (50%)
IgI_3_NCAM-1 211..308 CDD:143207 28/97 (29%)
Ig strand B 231..235 CDD:143207 1/3 (33%)
Ig strand C 244..248 CDD:143207 0/3 (0%)
Ig strand E 271..275 CDD:143207 1/3 (33%)
Ig strand F 285..290 CDD:143207 2/4 (50%)
Ig strand G 298..301 CDD:143207 1/3 (33%)
IgI_NCAM-1 307..413 CDD:143277 24/112 (21%)
Ig strand B 326..330 CDD:143277 2/3 (67%)
Ig strand C 339..343 CDD:143277 0/3 (0%)
Ig strand E 379..383 CDD:143277 1/3 (33%)
Ig strand F 393..398 CDD:143277 2/4 (50%)
Ig strand G 406..409 CDD:143277 0/2 (0%)
Ig_3 422..494 CDD:404760 14/71 (20%)
Ig strand B 433..437 CDD:409353 0/3 (0%)
Ig strand C 446..450 CDD:409353 2/3 (67%)
Ig strand E 473..477 CDD:409353 1/3 (33%)
Ig strand F 487..492 CDD:409353 1/4 (25%)
FN3 509..606 CDD:238020 23/112 (21%)
fn3 619..701 CDD:394996
Herpes_BLLF1 <842..1133 CDD:282904
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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