DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG34353 and lad-2

DIOPT Version :9

Sequence 1:NP_001287571.1 Gene:CG34353 / 5740590 FlyBaseID:FBgn0085382 Length:581 Species:Drosophila melanogaster
Sequence 2:NP_001023496.1 Gene:lad-2 / 177078 WormBaseID:WBGene00002243 Length:1187 Species:Caenorhabditis elegans


Alignment Length:617 Identity:119/617 - (19%)
Similarity:191/617 - (30%) Gaps:241/617 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 TISKPGHIRDRRVGSLPHILFLAIAVVSLHFESV-------------SAQSMMTKNEPMFISRSE 93
            |:...||                     |||.||             :|.|.:.:.|        
 Worm   181 TVDNEGH---------------------LHFSSVELSDGKATLVYECAATSPVLRGE-------- 216

  Fly    94 TFKFITGETIVLPCEVANTDTYVVAWKR------GIAILTAGSVKV------------------- 133
               :.:|:.|.|..|.:...::.|  |:      .:.:...|.:|:                   
 Worm   217 ---YRSGDRIQLDIEPSQDKSHPV--KKMSVSPSEVTVRAGGQLKLQCIFGGRPLPTIFWSKIDG 276

  Fly   134 -TPDPRVRLVN------GFNLQIRDALPTDAGDYICQIATMDPREITHTVEILV---------PP 182
             .|..|::.:.      |.:|.:.:..|.|||.|.|:     .|.:.|||.:.|         ||
 Worm   277 ELPKSRIKDLTSHESDFGRSLIVENVHPDDAGAYECR-----GRHLVHTVNVRVMAAPFWEFDPP 336

  Fly   183 RIHHISTGGHLQVKKGSSVRIECSATGNPMPNVTWSRKNNILPNGEEKL------HSHVLSIENV 241
            |        .:.:.:.|:..:||.|.|.|.|.:|||.....|....|..      |..:|.:.|:
 Worm   337 R--------DISLPEESTGELECLAGGQPTPIITWSMNGKFLHELAEDSRRVLLDHGRILRVRNL 393

  Fly   242 DRH-KGGVYICTANNRVG------------------QPASS--QVVLHVLFSPEISVERPVVFSG 285
            :.. ..|||.|.|:|.:|                  .||:.  :||||                 
 Worm   394 NHDLDTGVYQCNASNPLGYVFANAFVHVRAHAPFFRMPAARHWKVVLH----------------- 441

  Fly   286 EGHEATLV--CIVHGETQPEVIWFKDTMQLDTTERHIMETRGS-----RHTLIIRKVHPQDFGNY 343
                :|:|  |.|....:..|.|      :|..:|.:....|.     .||.::..|:..|.|.|
 Worm   442 ----STVVLDCDVDAAPEAMVRW------VDADDRPLQVVEGKNKLFPNHTFMVYDVNSADEGLY 496

  Fly   344 SCVAENQLGKARKTLQLS-GKPNVAVFNSPP-----------------ISQYKDRYNISWAVDSH 390
            .|...|:.|..|.|.:|. .||...|....|                 ::..:......|.::..
 Worm   497 YCNVSNKYGINRATNRLQVFKPTYFVRIPTPKRLILEAGETAEVFCEAVADPRLPIRYQWTINGK 561

  Fly   391 SPIE-EY------KLSFRKLPQGHEVVGNAIDSSS-SSSSMSSSSSQMYGSGLHAHRIGSNMGGL 447
            ...| :|      :|.||.:...|..:   ||.:: :...:..:|.|:....:.||         
 Worm   562 VLTESQYYEILPDRLRFRSVRGRHSGI---IDCAAITDVDVKLASMQLIVKDVPAH--------- 614

  Fly   448 SGLSGSGSYSGYGNVIHWGHNDWRNVVLPAVPVSHHYAQGMSYMVR------------------- 493
                         .|:...|...|...:..|..|.|......|:|.                   
 Worm   615 -------------PVVETAHCSERKATVKWVAASDHGDSIKKYIVEMFTDFKKNEWEVINEEVNV 666

  Fly   494 ---------GLDPDQHYEATVQSRNRYGWSDL 516
                     .|.|..:|...|.:.|.:|.||:
 Worm   667 NKETFEVDITLTPWVNYTFRVVAVNSHGRSDM 698

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34353NP_001287571.1 IG_like 100..180 CDD:214653 22/111 (20%)
Ig 103..177 CDD:143165 20/105 (19%)
IG_like 191..269 CDD:214653 27/104 (26%)
IGc2 198..258 CDD:197706 21/66 (32%)
I-set 273..360 CDD:254352 20/93 (22%)
Ig 290..359 CDD:143165 20/75 (27%)
FN3 <466..524 CDD:238020 15/79 (19%)
lad-2NP_001023496.1 IG_like 48..116 CDD:214653
Ig 49..121 CDD:299845
Ig 124..214 CDD:299845 10/53 (19%)
IG_like 244..325 CDD:214653 16/85 (19%)
Ig 255..325 CDD:299845 15/74 (20%)
I-set 335..421 CDD:254352 25/93 (27%)
Ig4_L1-NrCAM_like 344..422 CDD:143179 22/77 (29%)
IG_like 438..515 CDD:214653 25/103 (24%)
Ig 443..516 CDD:299845 21/78 (27%)
IG_like 527..608 CDD:214653 12/83 (14%)
Ig 535..>593 CDD:299845 9/60 (15%)
FN3 610..697 CDD:238020 16/108 (15%)
FN3 721..804 CDD:238020
fn3 823..909 CDD:278470
FN3 921..1010 CDD:238020
FN3 1016..1108 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.