DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG34353 and rig-5

DIOPT Version :10

Sequence 1:NP_001287571.1 Gene:CG34353 / 5740590 FlyBaseID:FBgn0085382 Length:581 Species:Drosophila melanogaster
Sequence 2:NP_001251131.1 Gene:rig-5 / 172791 WormBaseID:WBGene00004372 Length:482 Species:Caenorhabditis elegans


Alignment Length:437 Identity:113/437 - (25%)
Similarity:169/437 - (38%) Gaps:81/437 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 GKMAAEARTISKPGHIRDR-RVGSLPHI-------LFLAIAVVSLHF-ESVSAQSMMTKNEPMFI 89
            ||..|....:|.....|.| |...|.||       ||..:..|.|.| ::.|..:..|..:|...
 Worm    28 GKWTARDSALSGAPTFRGRGRFVILFHIPLQEKMYLFALLCGVLLVFKQACSRGAPPTIQQPSMS 92

  Fly    90 SRSETFKFITGETIVLPCEVANTDTYVVAWKRGIAILTAGSVKVTPDPRV--------------- 139
            |...    :.|:.:...|.|.:..:::||:           ||....||:               
 Worm    93 SAVA----LLGQDVDFTCIVNDLGSHMVAF-----------VKADSPPRLLSFDEKVFRRRNKYE 142

  Fly   140 ------RLVNGFNLQIRDALPTDAGDYICQIATMDPREITHTVEILVPPRIHHISTGGHLQVKKG 198
                  .|.|.:.|.|::...:|.|:|.|||.|......|..:::.|||.:.. ||...::|::|
 Worm   143 LKPRIGDLHNEWVLTIKNVQESDRGNYSCQINTEPITLSTGELDVKVPPVVSR-STPAAVEVREG 206

  Fly   199 SSVRIECSATGNPMPNVTWSRK-------NNILPNGEEKLHSHVLSIENVDRHKGGVYICTANNR 256
            ::|.:.|.|.|||.|.|.|.|:       |.....|....|..||.:..|.|.....|:|.|:|.
 Worm   207 NNVSLTCKADGNPTPTVIWRRQDRQIIRYNGATGFGASVFHGPVLHLTKVSRKHMSEYLCVASNG 271

  Fly   257 VGQPASSQVVLHVLFSPEISVERPVVFSGEGHEATLVCIVHGETQPEVIWFKDTMQL----DTTE 317
            :....|..|.|.|.|.|.:..:...|.:..|..|.:||......:||:.|.||...:    :...
 Worm   272 IPPDESWTVKLLVTFPPLVQAQSETVQASVGSMARMVCTTEAWPRPEMGWEKDGEPVYESNNVAM 336

  Fly   318 RHIMETR-GSRHTLIIRKVHPQDFGNYSCVAENQLGKARKTLQLSGKPNVAVFNSPPISQ----- 376
            .|.:..: .|.|.|.||.|....||.|.|||:|..|.....:.|:...:....||..|.:     
 Worm   337 THTVSGQYHSVHILEIRNVQSSHFGVYRCVAKNDNGIHHSQVTLNQISHNHFTNSNLIPEGSGMP 401

  Fly   377 ---------------YKDRYNISWAVDSHSPIEEYKLSFRKLPQGHE 408
                           .:::.|.|...||.||.:   |.|....:.||
 Worm   402 RGYSEDDEADEEEDNLENQKNDSEEEDSQSPPQ---LEFYSQARRHE 445

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34353NP_001287571.1 IG_like 100..180 CDD:214653 21/100 (21%)
Ig strand B 103..107 CDD:409353 0/3 (0%)
Ig strand C 116..120 CDD:409353 2/3 (67%)
Ig strand E 145..149 CDD:409353 1/3 (33%)
Ig strand F 159..164 CDD:409353 2/4 (50%)
Ig strand G 173..176 CDD:409353 1/2 (50%)
Ig 182..269 CDD:472250 29/93 (31%)
Ig strand B 201..205 CDD:409353 1/3 (33%)
Ig strand C 214..218 CDD:409353 1/3 (33%)
Ig strand F 248..253 CDD:409353 2/4 (50%)
Ig strand G 262..265 CDD:409353 1/2 (50%)
Ig_3 273..349 CDD:464046 24/80 (30%)
FN3 <466..524 CDD:238020
rig-5NP_001251131.1 IG_like 92..189 CDD:214653 22/111 (20%)
Ig strand B 102..106 CDD:409353 0/3 (0%)
Ig strand C 118..122 CDD:409353 2/14 (14%)
Ig strand E 154..158 CDD:409353 1/3 (33%)
Ig strand F 168..173 CDD:409353 2/4 (50%)
Ig_3 190..270 CDD:464046 26/80 (33%)
Ig_3 287..369 CDD:464046 24/81 (30%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.