DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG34370 and Nrx-1

DIOPT Version :9

Sequence 1:NP_001097404.2 Gene:CG34370 / 5740565 FlyBaseID:FBgn0085399 Length:952 Species:Drosophila melanogaster
Sequence 2:NP_001262840.1 Gene:Nrx-1 / 42646 FlyBaseID:FBgn0038975 Length:1847 Species:Drosophila melanogaster


Alignment Length:635 Identity:121/635 - (19%)
Similarity:203/635 - (31%) Gaps:202/635 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   396 SEGIFLSIAHWYPP-NTSCSYHIKGHVGEIVRLY------FPSFRINRIESPI-LKYE-GDCGES 451
            |:..|.:...||.. |.:.....|......:.||      :..|.:..:|..: |:|. |...:.
  Fly   110 SQNSFYTFRKWYTGLNGTLELEFKTEQPNGLVLYTDDGGTYDFFELKLVEGALRLRYNLGGGAQI 174

  Fly   452 LTI----YDSDHADPARIIKTFCDTFSRPMEKVDFVSTSPSLYVQFDSKTGSY-SGSSLYYWAHY 511
            :|:    :|. |....::::....| |..::.|....::.....||    |.: |.|.:|.....
  Fly   175 ITVGRELHDG-HWHKVQVLRNDEQT-SLIVDGVSQQRSTKGKEFQF----GKFASNSDVYVGGMP 233

  Fly   512 DFFNNTRFGDPVPNTLCDEVMYAWKHPGGRLRSPLNSLIF-KRTGGS---------------DVR 560
            :::::......:|:.:.:.          |.|..:.:|:: .:.|||               ||.
  Fly   234 NWYSSKLALLALPSVIFEP----------RFRGAIRNLVYADQPGGSTRRQEIKQQRDIKCGDVP 288

  Fly   561 CQYKFVTDRRLYARAIIEVNSVSFKELPYNSNACTR---CHEERV----DKLVIWEERDKYQNNL 618
            |.:..:..|....|.:...|:         ::||.|   |....:    |...|.|.|:...:..
  Fly   289 CDHGELPARERPLRGVRGGNT---------TDACERNDPCQHGGICISTDSGPICECRNLEYDGQ 344

  Fly   619 ACFCDNIP-----RAVRVIS-SADQMNLEMIVQGQHAITSYF--KNPNPLFEATYEFAHGPLCGP 675
            .|..:..|     |..:.:| ...|...|.||..|.||:.||  :.||.|...|   .||.....
  Fly   345 YCEKEKAPSEATFRGTQFLSYDLGQTGAEPIVSAQDAISFYFRTRQPNGLLFYT---GHGTDYLN 406

  Fly   676 ITLGPSPDGELVFPYKKALAMVSGPMAPPEHHYRREKC-----IWELKVAAQRDL---------- 725
            :.|   .||.:    ...:.:.:|..   |.|.:..|.     .|. ||...|.:          
  Fly   407 LAL---RDGGV----SLTMGLANGKQ---EMHIKPSKVRFDDHQWH-KVTVHRRIQEISSITSFC 460

  Fly   726 -WLNLEKARFADRSCDSAKI------EVYLAGRLEPR----------FVVCPENISLARDLPILT 773
             .:.:....:.|.|..:.|.      .||:.|.:.||          ||.|...:..:.|...|.
  Fly   461 RLVTVVDDVYTDHSHIAGKFTMLSSSRVYVGGAVNPRALLGARVHTNFVGCLRKVEFSADTLNLN 525

  Fly   774 TAELGATGA-------------------------------------------------DQEPLPV 789
            ..:|..:|:                                                 .:||..:
  Fly   526 LIDLAKSGSKLIQVAGNLEYQCPSGDPQDPVTFTTRESHLVLPPWETGKQSSISFKFRTKEPNGI 590

  Fly   790 LIQYTGDGQPGRNIFRLVWTEL------FHLP-------------RNPDGSLAASLLQDGG---- 831
            ::..||..||......|:..||      .||.             |..||.....:|:..|    
  Fly   591 IVLATGSKQPRAKNPVLIAIELLNGHIYIHLDLGSGASKVRASRRRVDDGDWHDLILRRNGRDAK 655

  Fly   832 -------CDFRCPGD-TEVCIPKHLLCNGI------ANCPNVTHTSTLSQ 867
                   .|||.||| |.:.:..|:...|:      .:.|....|:||.|
  Fly   656 VSVDGVWNDFRTPGDGTILELDGHMYLGGVGPAYNSVSWPAAIWTATLRQ 705

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34370NP_001097404.2 CUB 88..195 CDD:238001
CUB 244..363 CDD:238001
CUB 407..509 CDD:238001 22/115 (19%)
Nrx-1NP_001262840.1 LamG 110..263 CDD:238058 29/168 (17%)
EGF_CA 311..347 CDD:238011 8/35 (23%)
Laminin_G_2 386..517 CDD:280389 29/144 (20%)
LamG 555..716 CDD:238058 30/151 (20%)
EGF 746..777 CDD:278437
Laminin_G_2 814..945 CDD:280389
LamG 988..1136 CDD:238058
EGF 1164..1195 CDD:278437
Laminin_G_2 1233..1356 CDD:280389
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45444880
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

Return to query results.
Submit another query.