DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG34354 and RNA15

DIOPT Version :10

Sequence 1:NP_001097953.2 Gene:CG34354 / 5740528 FlyBaseID:FBgn0085383 Length:550 Species:Drosophila melanogaster
Sequence 2:NP_011471.1 Gene:RNA15 / 852838 SGDID:S000003012 Length:296 Species:Saccharomyces cerevisiae


Alignment Length:114 Identity:27/114 - (23%)
Similarity:57/114 - (50%) Gaps:6/114 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    88 GNNSKPEQFHIFVGDLSAEIETQQLKDAFTPFGEISDCRVVRDPQTLKSKGYGFVSFVKKSEAET 152
            |..:.|....:::|.:..:...:|:.|..:..|.:.:.:::.||||.:||||.|:.|.....:.:
Yeast    10 GVQNNPPSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSAS 74

  Fly   153 AITAMNGQWLGSRSIRTNWATRKPPATKADMNAKPLTFDEVYNQSSPTN 201
            |:..:||..||||.::..:      ::.:|::.......:.||..:..|
Yeast    75 AVRNLNGYQLGSRFLKCGY------SSNSDISGVSQQQQQQYNNINGNN 117

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34354NP_001097953.2 PABP-1234 <90..420 CDD:130689 26/112 (23%)
RRM2_TIA1_like 97..171 CDD:409789 21/73 (29%)
RRM3_TIA1_like 202..276 CDD:409790 27/114 (24%)
RNA15NP_011471.1 RRM_CSTF2_RNA15_like 18..94 CDD:409832 21/81 (26%)
CSTF_C 255..291 CDD:464130
Blue background indicates that the domain is not in the aligned region.

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