DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG34354 and AT5G54580

DIOPT Version :10

Sequence 1:NP_001097953.2 Gene:CG34354 / 5740528 FlyBaseID:FBgn0085383 Length:550 Species:Drosophila melanogaster
Sequence 2:NP_200269.1 Gene:AT5G54580 / 835546 AraportID:AT5G54580 Length:156 Species:Arabidopsis thaliana


Alignment Length:106 Identity:31/106 - (29%)
Similarity:50/106 - (47%) Gaps:12/106 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    67 SQQQQQQQMSQQQQQQQQQLVGNNSKPEQFHIFVGDLSAEIETQQLKDAFTPFGEISDCRVVRDP 131
            |.|.:.|..::.|.:....|            ||..||....::.|:.||..|||::|.:||.|.
plant    39 SPQAESQTPARPQAEPSTNL------------FVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDR 91

  Fly   132 QTLKSKGYGFVSFVKKSEAETAITAMNGQWLGSRSIRTNWA 172
            .:..|||:|||.:....::...|..|:|::|....|...:|
plant    92 VSGYSKGFGFVRYATLEDSAKGIAGMDGKFLDGWVIFAEYA 132

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34354NP_001097953.2 PABP-1234 <90..420 CDD:130689 26/83 (31%)
RRM2_TIA1_like 97..171 CDD:409789 25/73 (34%)
RRM3_TIA1_like 202..276 CDD:409790
AT5G54580NP_200269.1 RRM 55..138 CDD:440488 27/90 (30%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.