DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG34354 and AT3G15010

DIOPT Version :10

Sequence 1:NP_001097953.2 Gene:CG34354 / 5740528 FlyBaseID:FBgn0085383 Length:550 Species:Drosophila melanogaster
Sequence 2:NP_188119.1 Gene:AT3G15010 / 820730 AraportID:AT3G15010 Length:404 Species:Arabidopsis thaliana


Alignment Length:407 Identity:97/407 - (23%)
Similarity:138/407 - (33%) Gaps:132/407 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    90 NSKPEQFHIFVGDLSAEIETQQLKDAFTPFGEISDCRVVRDPQTLKSKGYGFVSFV--------- 145
            :|...|..:|:..|:|:..|:.|:..|:.:|::.:..|:.|..|.||||||||:|:         
plant    69 DSDISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLAL 133

  Fly   146 ----KKSEAETAIT---AMNGQWLGSR----SIRTNWATRKP---PATK--------ADMNAKPL 188
                ||.:....:|   |...|..||:    |:|..:....|   ||.:        .|:...||
plant   134 KEPSKKIDGRVTVTQLAASGNQGTGSQIADISMRKIYVANVPFDMPADRLLNHFMAYGDVEEGPL 198

  Fly   189 TFDEVYNQSSPTNCTVYCGGINGALSGFLNEEILQKTFSPYGTIQEIRVFKDKGYAFVRFSTKEA 253
            .||:|..                                           |.:|:|...:.|.|.
plant   199 GFDKVTG-------------------------------------------KSRGFALFVYKTAEG 220

  Fly   254 ATHAIVAVNNTEINQQPVK--------CAW---GKESGDPNHMSAIAGGA---------LAQGFP 298
            |..|:.         .|||        |..   ||:.|.|....|..||:         :....|
plant   221 AQAALA---------DPVKVIDGKHLNCKLAVDGKKGGKPGMPQAQDGGSGHGHVHGEGMGMVRP 276

  Fly   299 FGSAAAAAAAAAYGQQVAGYWYPPA----PTYPAAAPASALQPGQFLQGMQGFTYGQFAGYQQAG 359
            .|...||...:|||....|   |||    .|:.:....||...|.:      ..||...|....|
plant   277 AGPYGAAGGISAYGGYSGG---PPAHHMNSTHSSMGVGSAGYGGHY------GGYGGPGGTGVYG 332

  Fly   360 YMGMGVQLPGTWQSVPPQPQLASAAAATAPQITQSVGSALPQAAGVVAYPMQQFQVSPQLAEDEW 424
            .:|.|...|||.......|..:.......|   :|....|..:||   ||.|..|.         
plant   333 GLGGGYGGPGTGSGQYRMPPSSMPGGGGYP---ESGHYGLSSSAG---YPGQHHQA--------- 382

  Fly   425 LAPSLLVXLPXGMAMYP 441
            :..|.:. :| | .|||
plant   383 VGTSPVPRVPHG-GMYP 398

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34354NP_001097953.2 PABP-1234 <90..420 CDD:130689 91/384 (24%)
RRM2_TIA1_like 97..171 CDD:409789 28/93 (30%)
RRM3_TIA1_like 202..276 CDD:409790 11/84 (13%)
AT3G15010NP_188119.1 RRM_SF 75..150 CDD:473069 22/74 (30%)
RRM2_NsCP33_like 168..242 CDD:410187 20/125 (16%)

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