DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG34354 and trnau1apb

DIOPT Version :10

Sequence 1:NP_001097953.2 Gene:CG34354 / 5740528 FlyBaseID:FBgn0085383 Length:550 Species:Drosophila melanogaster
Sequence 2:NP_001025137.2 Gene:trnau1apb / 791478 ZFINID:ZDB-GENE-040426-2386 Length:316 Species:Danio rerio


Alignment Length:123 Identity:39/123 - (31%)
Similarity:58/123 - (47%) Gaps:18/123 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    92 KPE---QFHIFVGDLSAEIETQQLKDAF-TPFGEISDCRVVRDPQTLKSKGYGFVSFVKKSEAET 152
            :||   :|.:|||||::|::..||...| ..|......:||.||.. .|:|||||.|..::|.:.
Zfish    92 RPEPGPEFSVFVGDLTSEVDDYQLHQFFLKKFPSCKGAKVVTDPYG-NSRGYGFVKFSDENEQKK 155

  Fly   153 AITA-MNGQWLGSRSIRTNWATRKPPATKA----------DMNAKPLTFDEVYNQSSP 199
            |:.. .|...||.:.||.:.|..|  ..||          :.|.:...:.:.||...|
Zfish   156 ALEEFQNASGLGGKPIRISIAVNK--GNKASTYHNQNNTYNTNYQQQYYQQPYNSYYP 211

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34354NP_001097953.2 PABP-1234 <90..420 CDD:130689 39/123 (32%)
RRM2_TIA1_like 97..171 CDD:409789 28/75 (37%)
RRM3_TIA1_like 202..276 CDD:409790
trnau1apbNP_001025137.2 RRM1_SECp43 7..90 CDD:410022
RRM2_SECp43 98..179 CDD:410024 30/81 (37%)
Trnau1ap 211..311 CDD:465438 1/1 (100%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 239..285
Blue background indicates that the domain is not in the aligned region.

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