DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG34354 and Hnrnpm

DIOPT Version :10

Sequence 1:NP_001097953.2 Gene:CG34354 / 5740528 FlyBaseID:FBgn0085383 Length:550 Species:Drosophila melanogaster
Sequence 2:NP_084080.1 Gene:Hnrnpm / 76936 MGIID:1926465 Length:729 Species:Mus musculus


Alignment Length:489 Identity:88/489 - (17%)
Similarity:165/489 - (33%) Gaps:90/489 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 AAAAAAAAQQQQQSVTAAHLQHNGQQQHSQQQQQQQMSQQQQQQQQQLVGNN-----SKP-EQFH 97
            |||..||.:.:.:..:.|....:|......:.:::....::::::....|.|     |.| :::.
Mouse     7 AAAEVAATEPKMEEESGAPCVPSGNGAPGPKGEERPTQNEKRKEKNIKRGGNRFEPYSNPTKRYR 71

  Fly    98 IFVGDLSAEIETQQLKDAF-TPFGEISDCRVVRDPQTLKSKGYGFVSFVKKSEAETAITAMNGQW 161
            .|:.::..:::.|.|||.. ...||::...::.|.:. ||:|...|.|..:...:.|...:|...
Mouse    72 AFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEG-KSRGCAVVEFKMEESMKKAAEVLNKHS 135

  Fly   162 LGSRSIR---------TNWATRKPPATKADMNAKP------------LTFDEVYN------QSSP 199
            |..|.::         ...|.:|..||...|...|            |....:.|      |:..
Mouse   136 LSGRPLKVKEDPDGEHARRAMQKVMATTGGMGMGPGGPGMINIPPSILNNPNIPNEIIHALQAGR 200

  Fly   200 TNCTVYCGGINGALSGFLNEEILQKTFSPYGTIQEIRVFKDK-----GYAFVRFSTKEAATHAIV 259
            ...||:...::..:..    :.|::.||..|.:....:.:||     |...|.|.....|..||.
Mouse   201 LGSTVFVANLDYKVGW----KKLKEVFSMAGVVVRADILEDKDGKSRGIGIVTFEQSIEAVQAIS 261

  Fly   260 AVNNTEINQQPVKCAWGKES---GD----------PNHMSAIAGGALAQGFPF-------GSAAA 304
            ..|...:..:|:.....:.:   ||          |:.:..|..|....|.|.       |....
Mouse   262 MFNGQLLFDRPMHVKMDERALPKGDFFPPERPQQLPHGLGGIGMGLGPGGQPIDANHLSKGIGMG 326

  Fly   305 AAAAAAYGQQVAGYWYPPAPTYPAAAPASALQPGQFLQGM----------QGFTYGQFAGYQQAG 359
            ....|..|.:..|:...................|:|..||          .....|:....|..|
Mouse   327 NLGPAGMGMEGIGFGINKIGGMEGPFGGGMENMGRFGSGMNMGRINEILSNALKRGEIIAKQGGG 391

  Fly   360 YMGMGVQLPGTWQSVPPQPQLASAAAATAPQITQSVGSALPQAAGVVAYPMQQF-QVSPQLAEDE 423
              |.|..:||..:..|...:::.|.       .:.:|:.|......|...:::. .|..::...|
Mouse   392 --GAGGSVPGIERMGPGIDRISGAG-------MERMGAGLGHGMDRVGSEIERMGLVMDRMGSVE 447

  Fly   424 WLAPSLLVXLPXGMAMYPTQQHQQQQQQQQQQQM 457
            .:..|:....|.|:      .|.....::..|.|
Mouse   448 RMGSSIERMGPLGL------DHMASSIERMGQTM 475

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34354NP_001097953.2 PABP-1234 <90..420 CDD:130689 73/399 (18%)
RRM2_TIA1_like 97..171 CDD:409789 17/83 (20%)
RRM3_TIA1_like 202..276 CDD:409790 16/78 (21%)
HnrnpmNP_084080.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..65 9/57 (16%)
HnRNP_M_NLS 40..69 CDD:463289 4/28 (14%)
RRM1_hnRNPM 71..146 CDD:410058 17/75 (23%)
RRM2_hnRNPM 203..278 CDD:410060 16/78 (21%)
27 X 6 AA repeats of [GEVSTPAN]-[ILMV]-[DE]-[RH]-[MLVI]-[GAV] 399..607 14/90 (16%)
RRM3_hnRNPM 653..729 CDD:410062
Blue background indicates that the domain is not in the aligned region.

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