DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG34354 and Cstf2

DIOPT Version :10

Sequence 1:NP_001097953.2 Gene:CG34354 / 5740528 FlyBaseID:FBgn0085383 Length:550 Species:Drosophila melanogaster
Sequence 2:NP_001421314.1 Gene:Cstf2 / 683927 RGDID:1596566 Length:624 Species:Rattus norvegicus


Alignment Length:393 Identity:105/393 - (26%)
Similarity:151/393 - (38%) Gaps:93/393 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    98 IFVGDLSAEIETQQLKDAFTPFGEISDCRVVRDPQTLKSKGYGFVSFVKKSEAETAITAM---NG 159
            :|||::..|...:||||.|:..|.:...|:|.|.:|.|.|||||..:   .:.|||::||   ||
  Rat    18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEY---QDQETALSAMRNLNG 79

  Fly   160 QWLGSRSIRT-NWATRKPPATKADMNAKPLTFDEVYNQS-SPTNCTVYCGGINGALSGFLNEEIL 222
            :....|::|. |.|:.|.......:.......:..|.:| ||.:..   ..|:.|::....|::.
  Rat    80 REFSGRALRVDNAASEKNKEELKSLGTGAPVIESPYGESISPEDAP---ESISKAVASLPPEQMF 141

  Fly   223 ----QKTFSPYGTIQEIR--VFKDKGYAF--------VRFSTKEAATHAIVAVNNTEI----NQQ 269
                |.......:.||.|  :.::...|:        :|....|.|...:....|...    |.|
  Rat   142 ELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMRIVDPEIALKILHRQTNIPTLISGNPQ 206

  Fly   270 PVKCAWGKESGDPN-----------HMSAIAG----GA---LAQGFPFGSAAAAAAAAAYGQQVA 316
            ||..| |..|| ||           ...:::|    ||   :....|.|..|....|||    ||
  Rat   207 PVHVA-GPGSG-PNVSMNQQNPQAPQAQSLSGMHVNGAPPMMQASMPGGVPAPVQMAAA----VA 265

  Fly   317 GYWYPPAPTYPAAAPASALQPGQFLQGMQGFTYGQFAGYQQAGYMGMGVQLPGTWQSVPPQPQLA 381
            |    |.|  .:.|||..:|.   ..||||           ||.:.| .:..||.|..|..|  |
  Rat   266 G----PGP--GSLAPAGVMQA---QVGMQG-----------AGPVPM-ERGQGTLQHSPVGP--A 307

  Fly   382 SAAAATAPQ------ITQSVGSALPQAA------GVVAYPMQQFQVSPQLAEDEWLAPSLLVXLP 434
            ..|:....|      |..||..:.|...      |:...|||    .|:.|......|: .|..|
  Rat   308 GPASIERVQGQRTWMIWASVRGSTPSLLVSGGLDGIAVLPMQ----DPRAAMQRGALPA-NVPTP 367

  Fly   435 XGM 437
            .|:
  Rat   368 RGL 370

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34354NP_001097953.2 PABP-1234 <90..420 CDD:130689 100/374 (27%)
RRM2_TIA1_like 97..171 CDD:409789 29/76 (38%)
RRM3_TIA1_like 202..276 CDD:409790 17/91 (19%)
Cstf2NP_001421314.1 RRM_CSTF2_CSTF2T 10..94 CDD:410072 30/78 (38%)
CSTF2_hinge 112..191 CDD:433869 15/81 (19%)
CSTF_C 580..620 CDD:464130
Blue background indicates that the domain is not in the aligned region.

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