Protein Alignment CG34354 and Hnrnpa0

DIOPT Version :10

• Sequence 1: NP_001097953.2
• Gene: CG34354 / 5740528
• FlyBaseID: FBgn0085383
• Length: 550
• Species: Drosophila melanogaster
• Sequence 2: NP_001387712.1
• Gene: Hnrnpa0 / 681410
• RGDID: 1563684
• Length: 307
• Species: Rattus norvegicus
• Alignment Length: 281
• Identity: 72/281 - (25%)
• Similarity: 118/281 - (41%)
• Gaps: 51/281 - (18%)

  Fly    98 IFVGDLSAEIETQQLKDAFTPFGEISDCRVVRDPQTLKSKGYGFVSFVKKSEAETAITAMNGQWL 162
            :|:|.|:.:.....|:..|..||.::||.||.:|||.:|:.:|||::....||:.|:.|
  Rat     9 LFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA------ 67

  Fly   163 GSRSIRTNWATRKPPATKADMNAKPLTFDEVYNQSSPTNCTVYCGGINGALSGFLNEEILQKTFS 227
            ...::..|....|...::.| :|:|....:|..        ::.||:.|.::    |..|.:.||
  Rat    68 SPHAVDGNTVELKRAVSRED-SARPGAHAKVKK--------LFVGGLKGDVA----EGDLIEHFS 119

  Fly   228 PYGTIQEIRVFKDK------GYAFVRFSTKEAATH-AIVAVNNTEINQQPVKCAWGKESGDPNHM 285
            .:|.:::..:..||      |:.||.|.:.:||.. |:|..:..:.::..||.|..||
  Rat   120 QFGAVEKAEIIADKQSGKKRGFGFVYFQSHDAADKAAVVKFHPIQGHRVEVKKAVPKE------- 177

  Fly   286 SAIAGGALAQGFPFGSAAAAAAAAAYGQQVAGYWYPPAPTYPAAAPASALQPGQFLQGMQGF-TY 349
            ...|||        |.|.||......|:...|         .........|.|....|..|: :|
  Rat   178 DIHAGG--------GGARAARGGRGGGRGRGG---------GGGGGGGRDQNGLAKGGGGGYNSY 225

  Fly   350 GQFAGYQQAGYMGMGVQLPGT 370
            |.:.||...|..|.|....|:
  Rat   226 GGYGGYGAYGGGGGGGSYGGS 246

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG34354	NP_001097953.2	PABP-1234	<90..420	CDD:130689	72/281 (26%)
		RRM2_TIA1_like	97..171	CDD:409789	22/72 (31%)
		RRM3_TIA1_like	202..276	CDD:409790	21/80 (26%)
Hnrnpa0	NP_001387712.1	RRM1_hnRNPA0	5..83	CDD:409764	24/79 (30%)
		RRM2_hnRNPA0	99..178	CDD:409993	23/97 (24%)