DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG34354 and Dazl

DIOPT Version :10

Sequence 1:NP_001097953.2 Gene:CG34354 / 5740528 FlyBaseID:FBgn0085383 Length:550 Species:Drosophila melanogaster
Sequence 2:NP_001400853.1 Gene:Dazl / 680486 RGDID:1591714 Length:298 Species:Rattus norvegicus


Alignment Length:154 Identity:31/154 - (20%)
Similarity:61/154 - (39%) Gaps:30/154 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 PAAAAAAAAQQQQQSVTAAHLQHNGQQQHSQQQQQQQMSQQQQQQQQQLVGNNSKPEQFHIFVGD 102
            |.:|.:..|..|..|.|.                    ||.....:.:::.|.       :|||.
  Rat     9 PNSAVSREASTQSSSATT--------------------SQGYVLPEGKIMPNT-------VFVGG 46

  Fly   103 LSAEIETQQLKDAFTPFGEISDCRVVRDPQTLKSKGYGFVSFVKKSEAETAITAMNGQWLGSRSI 167
            :...::..:::..|..:|.:.:.:::.| :|..|||||||||....:.:..:.:...  ...:.:
  Rat    47 IDVRMDETEIRSFFARYGSVKEVKIITD-RTGVSKGYGFVSFYNDVDVQKIVESQIN--FHGKKL 108

  Fly   168 RTNWATRKPPATKADMNAKPLTFD 191
            :...|.||.......:..:||.|:
  Rat   109 KLGPAIRKQNLCTYHVQPRPLIFN 132

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34354NP_001097953.2 PABP-1234 <90..420 CDD:130689 22/102 (22%)
RRM2_TIA1_like 97..171 CDD:409789 16/73 (22%)
RRM3_TIA1_like 202..276 CDD:409790
DazlNP_001400853.1 RRM_DAZL 35..116 CDD:410073 18/90 (20%)
PABP-1234 <40..208 CDD:130689 23/103 (22%)
Blue background indicates that the domain is not in the aligned region.

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