DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG34354 and snrnp35

DIOPT Version :9

Sequence 1:NP_001097953.2 Gene:CG34354 / 5740528 FlyBaseID:FBgn0085383 Length:550 Species:Drosophila melanogaster
Sequence 2:NP_001025412.1 Gene:snrnp35 / 569999 ZFINID:ZDB-GENE-050706-77 Length:208 Species:Danio rerio


Alignment Length:102 Identity:28/102 - (27%)
Similarity:45/102 - (44%) Gaps:21/102 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    98 IFVGDLSAEIETQQLKDAFTPFGEISDCRVVRDPQTLKSKGYGFVSFVKKSEAETAITAMNGQWL 162
            :||..|:.:...::|:|.|:.||:|...|:|||..|..||.|.|:.:  |.|             
Zfish    52 LFVARLNPQTTEEKLRDVFSKFGDIRRLRLVRDVVTGFSKRYAFIEY--KEE------------- 101

  Fly   163 GSRSIRTNWATRKPPATKADMNAKPLTFDEVYNQSSP 199
              ||::..|.    .|.|..::...|..|....::.|
Zfish   102 --RSLKRAWR----DANKLILDQYELLVDVEQERTLP 132

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34354NP_001097953.2 RRM2_TIA1_like 97..171 CDD:240799 22/72 (31%)
RRM3_TIA1_like 202..278 CDD:240800
snrnp35NP_001025412.1 RRM <47..>172 CDD:223796 28/102 (27%)
RRM_snRNP35 47..139 CDD:240683 28/102 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 133..208 28/102 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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