DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG34354 and srsf10a

DIOPT Version :10

Sequence 1:NP_001097953.2 Gene:CG34354 / 5740528 FlyBaseID:FBgn0085383 Length:550 Species:Drosophila melanogaster
Sequence 2:XP_073781698.1 Gene:srsf10a / 564283 ZFINID:ZDB-GENE-131121-145 Length:227 Species:Danio rerio


Alignment Length:104 Identity:25/104 - (24%)
Similarity:49/104 - (47%) Gaps:3/104 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    92 KPEQFHIFVGDLSAEIETQQLKDAFTPFGEISDCRVVRDPQTLKSKGYGFVSFVKKSEAETAITA 156
            :|....:|:.::|.:...:.|:..|..:|.|.|..:..|..:.:.:|:.:|.|....:||.|:..
Zfish     6 RPPNTSLFIRNISDDSRPEDLRREFGRYGPIVDVYIPVDFYSRRPRGFAYVQFEDVRDAEDALHN 70

  Fly   157 MNGQWLGSRSIRTNWA--TRKPP-ATKADMNAKPLTFDE 192
            ::.:|:..|.|...:|  .||.| ..|......|..:|:
Zfish    71 LDRKWICGRQIEIQFAQGDRKTPNQMKTKEKHSPSRYDD 109

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34354NP_001097953.2 PABP-1234 <90..420 CDD:130689 25/104 (24%)
RRM2_TIA1_like 97..171 CDD:409789 17/73 (23%)
RRM3_TIA1_like 202..276 CDD:409790
srsf10aXP_073781698.1 None
Blue background indicates that the domain is not in the aligned region.

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