DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG34354 and TRNAU1AP

DIOPT Version :10

Sequence 1:NP_001097953.2 Gene:CG34354 / 5740528 FlyBaseID:FBgn0085383 Length:550 Species:Drosophila melanogaster
Sequence 2:NP_060316.1 Gene:TRNAU1AP / 54952 HGNCID:30813 Length:287 Species:Homo sapiens


Alignment Length:112 Identity:39/112 - (34%)
Similarity:61/112 - (54%) Gaps:14/112 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    90 NSKPEQFHIFVGDLSAEIETQQLKDAFTPFGEISDCR---VVRDPQTLKSKGYGFVSFVKKSEAE 151
            ::.|| :.:|||||:.:::...|.:.|...  ...||   ||.| ||..|||||||.|..:.|.:
Human    91 DNSPE-YSLFVGDLTPDVDDGMLYEFFVKV--YPSCRGGKVVLD-QTGVSKGYGFVKFTDELEQK 151

  Fly   152 TAITAMNGQ-WLGSRSIRTNWATRKPPATKADMNAKPLTFDEVYNQS 197
            .|:|...|. .|||:.:|.:.|.  |.|::    .||:.:.::|:.|
Human   152 RALTECQGAVGLGSKPVRLSVAI--PKASR----VKPVEYSQMYSYS 192

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34354NP_001097953.2 PABP-1234 <90..420 CDD:130689 39/112 (35%)
RRM2_TIA1_like 97..171 CDD:409789 30/77 (39%)
RRM3_TIA1_like 202..276 CDD:409790
TRNAU1APNP_060316.1 RRM1_SECp43 4..87 CDD:410022
RRM2_SECp43 95..176 CDD:410024 32/86 (37%)
Trnau1ap <206..284 CDD:465438
Blue background indicates that the domain is not in the aligned region.

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