DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG34354 and CG7903

DIOPT Version :10

Sequence 1:NP_001097953.2 Gene:CG34354 / 5740528 FlyBaseID:FBgn0085383 Length:550 Species:Drosophila melanogaster
Sequence 2:NP_651755.2 Gene:CG7903 / 43554 FlyBaseID:FBgn0039730 Length:384 Species:Drosophila melanogaster


Alignment Length:317 Identity:68/317 - (21%)
Similarity:99/317 - (31%) Gaps:110/317 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   200 TNCTVYCGGINGALSGFLNEEILQKTFSPYGTIQEIRVFKDKGYAFVRFSTKEAATHAIVAVNNT 264
            |...|:.|.:...     ..|.|::.|:.||::.|..|.  ...|||.....:.|..||.|:|.|
  Fly     3 TTAKVFVGSLPRC-----KPEELRRLFTNYGSVVECDVM--NRCAFVHLENTDMAEAAIAALNGT 60

  Fly   265 EINQQPVKCAWGKE-------------SGD-PNHM-SAIAGGALAQ-----------------GF 297
            ....||:....|:.             ||| |... |.:.||...:                 |.
  Fly    61 IFKGQPIVVEAGRPKYGPGGGSRGQPGSGDNPGRRPSQVQGGGADKRPHESNTNFKRNFREEVGG 125

  Fly   298 PF---GSAAAAAAAAAYG--QQVAGYWYPPAPTYPAAAPASALQPGQFLQGMQGFTYGQFAGYQQ 357
            .|   |..::.::||.:|  :..:.|....:..|....|.:....    || |||. .:|||   
  Fly   126 RFSNEGPRSSNSSAAKFGPVRNESNYRQQRSAPYSKGPPNNESSN----QG-QGFR-NKFAG--- 181

  Fly   358 AGYMGMGVQLPGTWQS--------VPPQP----------------------QLASAAAATAPQIT 392
            .|..|......|.:.|        ..|||                      |..|:::.....:.
  Fly   182 GGKFGGSAGNEGRFGSNRFQQRDNSGPQPGRRNFKNSPTSGYRGGGNNSDFQGGSSSSGGGGSVN 246

  Fly   393 QSVGSALPQAAGVVAYPMQQFQVSPQLAEDEWLAPSLLVXLPXGMAMYPTQQHQQQQ 449
            |..|...|                         .||.:. .. |.|: |. :|||||
  Fly   247 QRAGGGGP-------------------------GPSHVRQDRRGFAL-PV-EHQQQQ 276

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34354NP_001097953.2 PABP-1234 <90..420 CDD:130689 58/286 (20%)
RRM2_TIA1_like 97..171 CDD:409789
RRM3_TIA1_like 202..276 CDD:409790 20/73 (27%)
CG7903NP_651755.2 RRM_SF 6..70 CDD:473069 20/70 (29%)
PABP-1234 <18..173 CDD:130689 37/161 (23%)
Blue background indicates that the domain is not in the aligned region.

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