Protein Alignment CG34354 and msi

DIOPT Version :9

• Sequence 1: NP_001097953.2
• Gene: CG34354 / 5740528
• FlyBaseID: FBgn0085383
• Length: 550
• Species: Drosophila melanogaster
• Sequence 2: NP_001247303.1
• Gene: msi / 43087
• FlyBaseID: FBgn0011666
• Length: 634
• Species: Drosophila melanogaster
• Alignment Length: 579
• Identity: 138/579 - (23%)
• Similarity: 207/579 - (35%)
• Gaps: 172/579 - (29%)

  Fly     2 LTMSTLMMPAPTIAMGAPQ-------ITMGPHKPPETKLLAIHPAAAAAAAAQQQQQSVTAAHLQ 59
            ||.:.::..|...:..|.|       :|.|..:|.:      .||..||.|..::..:.:|...|
  Fly   111 LTTAAVLKSAAQQSQQAVQQNQNAVVVTPGLEQPKQ------EPAQQAALALLKENVNASAGAGQ 169

  Fly    60 HNGQ-------QQHSQQQQQQQMSQQQQQQQQQLVGNNSKPEQFHIFVGDLSAEIETQQLKDAFT 117
            :|||       :..|..:....:|.          |:.|.|....:|||.||.:..:.:||:.|.
  Fly   170 NNGQAAMGGSNKSGSSGRSTPSLSG----------GSGSDPAPGKLFVGGLSWQTSSDKLKEYFN 224

  Fly   118 PFGEISDCRVVRDPQTLKSKGYGFVSFVKKSEAE----TAITAMNGQWLGSRSIRTNWATRKPPA 178
            .||.::|..:::||.|.:|:|:||::|.:....|    ..|..::|     :.|....||.|...
  Fly   225 MFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVEKVLKVPIHTLDG-----KKIDPKHATPKNRP 284

  Fly   179 TKADMNAKPLTFDEVYNQSSPTNCTVYCGGINGALSGFLNEEILQKTFSPYGTIQEIRVFKD--- 240
            .:|:...|                 ::.||::...|.   ||: :..||.:|.::|..:..|
  Fly   285 RQANKTKK-----------------IFVGGVSQDTSA---EEV-KAYFSQFGPVEETVMLMDQQT 328

  Fly   241 ---KGYAFVRFSTKEAATHAIVAVNNTEINQQPVKC--AWGKESGDPNHMSAIAGGALAQGFPFG 300
               :|:.||.|..::.... :..::...|..:.|:|  |..||:..|      |...|.:....|
  Fly   329 KRHRGFGFVTFENEDVVDR-VCEIHFHTIKNKKVECKKAQPKEAVTP------AAQLLQKRIMLG 386

  Fly   301 SAAAAAAAAAYGQQVAGYWYPPAPTYPAAAPASALQPGQFLQGMQGFTYGQFAGYQQAGYMGMGV 365
            :              .|...|.||                         ||..|.:.||...|.
  Fly   387 T--------------LGVQLPTAP-------------------------GQLIGARGAGVATMN- 411

  Fly   366 QLPGTWQSVPPQPQLASAAAATAPQITQSVGSALPQAAGVVAYPMQQFQVSPQLAEDEWLAPSLL 430
              |......|.| .|.|.|||.|.|          |||.:...|   |||....|     |.|:.
  Fly   412 --PLAMLQNPTQ-LLQSPAAAAAAQ----------QAALISQNP---FQVQNAAA-----AASIA 455

  Fly   431 VXLPXG--MAMYPTQQHQQQQQQQQQQQMLQQQHEQQTSGEYVKEPPYQ------TQQLQQLQHH 487
            . .. |  :..||                       ||:...|:..||.      |.....:|.|
  Fly   456 NQAGFGKLLTTYP-----------------------QTALHSVRYAPYSIPASAATANAALMQAH 497

  Fly   488 QLQQ----QHSHNQHQQQQHYIHQLYYPSHWVQQQQQQQQQVANNEQQPQQQQQQPPVA 542
            |.|.    .|.|.|.|||||:..|..:.:| |...|||||...|....|..|......|
  Fly   498 QAQSVAAAAHHHQQQQQQQHHHQQQTHNAH-VAAAQQQQQSHHNAVSNPASQAHSAAAA 555

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG34354	NP_001097953.2	RRM2_TIA1_like	97..171	CDD:240799	23/77 (30%)
		RRM3_TIA1_like	202..278	CDD:240800	18/83 (22%)
msi	NP_001247303.1	RRM1_hnRNPA_hnRNPD_like	205..276	CDD:240771	23/75 (31%)
		RRM2_MSI	292..365	CDD:240769	18/94 (19%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C45463992
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	2	1.840