DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG34354 and Rox8

DIOPT Version :10

Sequence 1:NP_001097953.2 Gene:CG34354 / 5740528 FlyBaseID:FBgn0085383 Length:550 Species:Drosophila melanogaster
Sequence 2:NP_732944.2 Gene:Rox8 / 42848 FlyBaseID:FBgn0005649 Length:470 Species:Drosophila melanogaster


Alignment Length:410 Identity:176/410 - (42%)
Similarity:213/410 - (51%) Gaps:106/410 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    88 GNNSKPE---QFHIFVGDLSAEIETQQLKDAFTPFGEISDCRVVRDPQTLKSKGYGFVSFVKKSE 149
            ||..|.:   ..||||||||.||||:.|::||.||||||:||:||||.|:|||||.|||||||:|
  Fly    84 GNQPKTDISSHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAE 148

  Fly   150 AETAITAMNGQWLGSRSIRTNWATRKPPATK---------ADMNAKP-----------LTFDEVY 194
            ||.||.||||||:|||||||||:|||.|..:         ..|...|           .||:|||
  Fly   149 AENAIQAMNGQWIGSRSIRTNWSTRKLPPPREPSKGGGQGGGMGGGPGNGSGVKGSQRHTFEEVY 213

  Fly   195 NQSSPTNCTVYCGGINGALSGFLNEEILQKTFSPYGTIQEIRVFKDKGYAFVRFSTKEAATHAIV 259
            |||||||.||||||..   ...::::::.|.|..:|.||::|||||||::|::|.|||||.|||.
  Fly   214 NQSSPTNTTVYCGGFP---PNVISDDLMHKHFVQFGPIQDVRVFKDKGFSFIKFVTKEAAAHAIE 275

  Fly   260 AVNNTEINQQPVKCAWGKESG---DPNHMSAIAGGALAQGFPFGSAAAAAAAAA----------- 310
            ..:|:|::...|||.||||:|   ..|:::|.|..|.|.......|||.||.||           
  Fly   276 HTHNSEVHGNLVKCFWGKENGGDNSANNLNAAAAAAAASANVAAVAAANAAVAAGAGMPGQMMTQ 340

  Fly   311 --------------------------YGQQVAGYWYPPA--PT------------YPAAAPASAL 335
                                      |..|..|||||||  ||            ||.|.|.||.
  Fly   341 QQIAAATGAAIPGQMMTPQQIAAQYPYAYQQMGYWYPPATYPTTQMQTQYMQQGYYPYAYPTSAQ 405

  Fly   336 QPGQFLQGMQGFTYGQFAGYQQAGY------MGMGVQLPGTWQSVPPQPQLASAAAATAPQITQS 394
            |.|       |....||:.   |||      :..||  |||   |.|....|:|:||.|..    
  Fly   406 QAG-------GVPCIQFSA---AGYRMVPPNVAWGV--PGT---VVPGVTAAAASAAAAAN---- 451

  Fly   395 VGSALPQAAGVVAYPMQQFQ 414
             ||..||.....|.|..|.|
  Fly   452 -GSLAPQMMYSAAMPQYQTQ 470

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34354NP_001097953.2 PABP-1234 <90..420 CDD:130689 174/408 (43%)
RRM2_TIA1_like 97..171 CDD:409789 58/73 (79%)
RRM3_TIA1_like 202..276 CDD:409790 33/73 (45%)
Rox8NP_732944.2 RRM1_TIA1_like 9..80 CDD:409788
RRM2_TIA1_like 96..170 CDD:409789 58/73 (79%)
RRM_SF 221..292 CDD:473069 33/73 (45%)
Blue background indicates that the domain is not in the aligned region.

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