DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG34354 and Syp

DIOPT Version :9

Sequence 1:NP_001097953.2 Gene:CG34354 / 5740528 FlyBaseID:FBgn0085383 Length:550 Species:Drosophila melanogaster
Sequence 2:NP_001262777.1 Gene:Syp / 42460 FlyBaseID:FBgn0038826 Length:761 Species:Drosophila melanogaster


Alignment Length:552 Identity:97/552 - (17%)
Similarity:164/552 - (29%) Gaps:213/552 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 MGAPQITMGPHKPPETKLLAIHPAAAAAAAAQQQQQSVTAAHLQHNGQQQHSQQQQQQQMSQQQQ 80
            :.||....||.:....|:|          ........||....::.|...|              
  Fly   156 VAAPATVKGPDEDKIKKIL----------ERTGYTLDVTTGQRKYGGPPPH-------------- 196

  Fly    81 QQQQQLVGNNSKPEQFHIFVGDLSAEIETQQLKDAFTPFGEISDCRVVRDPQTLKSKGYGFVSFV 145
             .:..:.||..:     :|.|.:..::...:|...|...|.|.|.|::.||.|..::||.||:|.
  Fly   197 -WEGNVPGNGCE-----VFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFT 255

  Fly   146 KKSEAETAITAMNGQWLGSRSIRTNWATRKPPATKADMNAK------PLTFD------------- 191
            .:..|..|:..:|     ...|||.   :|...|.:..|.:      |...|             
  Fly   256 NREAAVNAVRQLN-----DFEIRTG---KKIGVTISFNNHRLFVGNIPKNRDRDELIEEFSKHAP 312

  Fly   192 ---EVYNQSSPTN----------------------------------CTVYCGGINGA------- 212
               ||...|||.:                                  |.:.   ::.|       
  Fly   313 GLYEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDII---VDWADPQEEPD 374

  Fly   213 --------------LSGFLNEEILQKTFSPYGTIQEIRVFKDKGYAFVRFSTKEAATHAIVAVNN 263
                          |:..::|:.|::.|..||.::.::..||  |||:.|..:::|..|:..:|.
  Fly   375 EQTMSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERVKKIKD--YAFIHFEDRDSAVEAMRGLNG 437

  Fly   264 TEINQQPVKCAWGKESGDPNHMSAIAGG------ALAQGFPFGSAAAAAAAAAYGQQVAGYWYPP 322
            .||....::.:..|...|......|...      .:.|..|          ...|.:....:...
  Fly   438 KEIGASNIEVSLAKPPSDKKKKEEILRARERRMMQMMQARP----------GIVGFETLSPYRNL 492

  Fly   323 APTYPAAAPASALQPGQ--------------------FLQGMQGFTYGQFAGYQQ---------- 357
            :||:|:....:.::||.                    |....||.::|....|..          
  Fly   493 SPTHPSIMSLTPMRPGARMPLRTPIPREYDYFYDFFGFSDYRQGGSFGNNVSYYDDMYRWIDGDY 557

  Fly   358 ----------------AGYMGMGVQLP----GTWQSVPPQPQLASAAAATAPQITQSV------- 395
                            .|.:..|..||    |:..|.....|.::..:|:.|..:.|:       
  Fly   558 NYYDYPNGGGGGSGGGGGSVSGGTVLPLSAGGSQNSPMASGQRSARGSASGPSASPSLMGVGRGH 622

  Fly   396 -------------GS-------ALPQAAGVVA 407
                         ||       .:|||||..|
  Fly   623 GITVPRGRVVGQRGSISRLGAQTVPQAAGAAA 654

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34354NP_001097953.2 RRM2_TIA1_like 97..171 CDD:240799 22/73 (30%)
RRM3_TIA1_like 202..278 CDD:240800 19/96 (20%)
SypNP_001262777.1 RRM1_hnRNPR_like 205..283 CDD:240695 24/90 (27%)
RRM2_hnRNPR_like 286..367 CDD:240696 9/83 (11%)
RRM3_hnRNPR_like 381..452 CDD:240697 17/72 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45464015
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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